CX046806

Overview
NameCX046806
Unique NameCX046806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046806_ssr720 microsatellite CX046806_ssr720:720..731. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6928 contig Csv1_Contig6928:975..1839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046806 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.336e-86
Identity = 148/218 (67.89%), Postives = 177/218 (81.19%), Query Frame = 1
Query:    1 TSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIEXXXXXXXXXXXXXXXXXAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 654
            TSLLAGPT +IT INHAIGA GV+SQ+CK +V QYG+TI+++L++E  P+KICSQ+ LCTFDGTRG SMGIE                  MCS CEM V+WMQN+LR+N+T ++I+NY+N+LCDR+PSP G+SAVDC  LSSMP VSFTIGGK+FDLAP EY+L+VGEG  AQCISGFTAFD+ PPRGPLWILGDVFMGRYHTVFD+G L +G AEAA
Sbjct:  297 TSLLAGPTPVITMINHAIGAKGVVSQQCKAVVAQYGQTIMDLLLSEADPKKICSQINLCTFDGTRGVSMGIESVVDENAGKSSDSLHD-GMCSVCEMTVVWMQNQLRQNQTKERIINYINELCDRMPSPMGQSAVDCGQLSSMPTVSFTIGGKIFDLAPEEYILKVGEGPVAQCISGFTAFDIPPPRGPLWILGDVFMGRYHTVFDFGKLRVGSAEAA 513          
BLAST of CX046806 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 5.615e-85
Identity = 152/218 (69.72%), Postives = 175/218 (80.28%), Query Frame = 1
Query:    1 TSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIEXXXXXXXXXXXXXXXXXAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 654
            TSLLAGPT IIT+IN  IGA+GV+SQECKT+V QYG+ IL++L+AETQP+KICSQ+GLCTFDGTRG S GI                   MCSACEMAV+WMQN+L +N+T D IL+YVNQLC+RLPSP GESAVDC +L SMP++ FTIGGK F L P EY+L+VGEG AAQCISGFTA D+ PPRGPLWILGDVFMG YHTVFDYG L IGFA+AA
Sbjct:  292 TSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADP-MCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 508          
BLAST of CX046806 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 309.301 bits (791), Expect = 1.806e-83
Identity = 146/218 (66.97%), Postives = 174/218 (79.82%), Query Frame = 1
Query:    1 TSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIEXXXXXXXXXXXXXXXXXAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 654
            TSLLAGPT IIT+IN  IGA+GV+SQECKT+V QYG+ IL++L+AETQP KICSQ+GLCTFDG  G S GI+                  MC+ACEMAV+WMQN+L +N+T D ILNY+NQLCD+LPSP GES+VDC +L+SMP +SFTIGGK F L P EY+L+VGEG AAQCISGFTA D+ PPRGPLWILGDVFMG YHTVFDYG + +GFA++A
Sbjct:  293 TSLLAGPTAIITEINEKIGATGVVSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLCTFDGKHGVSAGIKSVVDDEAGESNGLQSGP-MCNACEMAVVWMQNQLAQNKTQDLILNYINQLCDKLPSPMGESSVDCGSLASMPEISFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGAYHTVFDYGKMRVGFAKSA 509          
BLAST of CX046806 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 3.766e-81
Identity = 143/218 (65.60%), Postives = 175/218 (80.28%), Query Frame = 1
Query:    1 TSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIEXXXXXXXXXXXXXXXXXAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 654
            TSLLAG TTI+TQIN AIGA+GV+SQ+CK+LVDQYGK+++EML++E QP+KICSQM LC+FDG+   SM IE                   C  C   V+WMQN++R+NET + I+NYV++LC+RLPSP GESAVDC +LSSMPN++FT+GGK F+L+P +YVL+VGEG  AQCISGFTA DVAPP GPLWILGDVFMG+YHTVFDYGNL +GFAEAA
Sbjct:  259 TSLLAGTTTIVTQINQAIGAAGVMSQQCKSLVDQYGKSMIEMLLSEEQPEKICSQMKLCSFDGSHDTSMIIESVVDKSKGKSSGLPMR---CVPCARWVVWMQNQIRQNETEENIINYVDKLCERLPSPMGESAVDCSSLSSMPNIAFTVGGKTFNLSPEQYVLKVGEGATAQCISGFTAMDVAPPHGPLWILGDVFMGQYHTVFDYGNLRVGFAEAA 473          
BLAST of CX046806 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 4.459e-74
Identity = 130/218 (59.63%), Postives = 160/218 (73.39%), Query Frame = 1
Query:    1 TSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIEXXXXXXXXXXXXXXXXXAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 654
            TSLLAGPT I+ Q+NHAIGA G+IS ECK +V +YG+ IL +LIA+T PQK+CSQ+GLC FDG R  S GIE                 AMCS CEMAV+W++N+LR N+T + ILNY NQLC+RLPSPNGES V C  +S MPN++FTI  K F L P +Y++++ +G    CISGF AFD+ PPRGPLWILGDVFMG YHTVFD+G   IGFA++A
Sbjct:  285 TSLLAGPTAIVAQVNHAIGAEGIISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLCMFDGKRSVSNGIESVVDKENLGSD------AMCSVCEMAVVWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDRIGFAKSA 496          
BLAST of CX046806 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.982e-23
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  355 VNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 651
            +N+     P  NGE  VDC  +  +P +SF +GGK FDL   +YVL V +     C+SGF   D+ PP GPLWILGDVF+G+Y+T FD GN  +GFA A
Sbjct:  288 INKAIGGTPIMNGEYMVDCSLIPKLPKISFVLGGKSFDLEGADYVLRVAQMGKTICLSGFMGIDIPPPNGPLWILGDVFIGKYYTEFDMGNDRVGFATA 386          
BLAST of CX046806 vs. ExPASy Swiss-Prot
Match: CATE_RANCA (Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.961e-22
Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  337 DQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFA 645
            +Q+ NY+      + + NGE  V C  LS MP+V+FTI G  + L P +Y+LE G G    C SGF   D++PP GPLWILGDVF+G+Y++VFD GN  +GFA
Sbjct:  291 EQLQNYIG-----VTNTNGEYGVSCSTLSLMPSVTFTINGLDYSLTPEQYMLEDGGGY---CSSGFQGLDISPPSGPLWILGDVFIGQYYSVFDRGNNRVGFA 385          
BLAST of CX046806 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.961e-22
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  376 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 654
            +P   GE  + C+ +S++P ++  +GGK + L+P +Y L+V +     C+SGF   D+ PP GPLWILGDVF+GRY+TVFD  N  +GFAEAA
Sbjct:  318 VPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 410          
BLAST of CX046806 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.153e-21
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 1
Query:  376 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 651
            +P   GE  + C+ +SS+P V   +GGK ++L P++Y+L+V +G    C+SGF   D+ PP GPLWILGDVF+G Y+TVFD  N  +GFA A
Sbjct:  316 VPLIQGEYMIPCEKVSSLPTVYLKLGGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGSYYTVFDRDNNRVGFANA 407          
BLAST of CX046806 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.153e-21
Identity = 44/91 (48.35%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  376 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQ-CISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFA 645
            +P  NGE  V+C  + S+PN++F +GG+ FDL   +Y+L++  G     C+SGF   D+  P GPLWILGDVF+GR+++VFD+GN  +GFA
Sbjct:  302 IPLFNGEYEVECSKIPSLPNITFNLGGQNFDLQGKDYILQMSNGNGGSTCLSGFMGMDIPAPAGPLWILGDVFIGRFYSVFDHGNKRVGFA 392          
The following BLAST results are available for this feature:
BLAST of CX046806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ASPR_CUCPE1.336e-8667.89Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPR_HORVU5.615e-8569.72Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
ASPR1_ORYSJ1.806e-8366.97Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
CYPR1_CYNCA3.766e-8165.60Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
ASPRX_ORYSJ4.459e-7459.63Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
ASPP_AEDAE7.982e-2349.49Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]
CATE_RANCA3.961e-2249.51Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1[more]
CATD_HUMAN3.961e-2248.39Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
CATD_MOUSE1.153e-2148.91Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
ASP3_CAEEL1.153e-2148.35Aspartic protease 3 OS=Caenorhabditis elegans GN=a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10C11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10C11-F21-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046806 ID=CX046806; Name=CX046806; organism=Citrus sinensis; type=EST; length=864bp
ACCTCGTTGTTGGCGGGCCCAACAACCATAATTACACAAATTAATCATGC
CATTGGAGCTTCTGGTGTCATAAGCCAAGAATGCAAGACTCTGGTTGACC
AATATGGAAAAACCATATTGGAAATGCTGATAGCTGAGACACAACCACAA
AAGATCTGCTCACAGATGGGTCTATGTACTTTTGATGGGACTCGAGGTTT
TAGCATGGGAATTGAGAGTGTCATAGATAAGAGCTCAGACAAGTCATCTG
ATGGTGTGCATGACTCTGCTATGTGCTCTGCTTGTGAGATGGCGGTCATA
TGGATGCAGAACAAGCTGAGGAGAAATGAGACAGCAGATCAAATCTTGAA
TTATGTGAATCAGCTTTGTGACCGTCTGCCCAGTCCAAATGGAGAATCAG
CTGTTGATTGTGACAATTTATCTTCCATGCCCAATGTTTCATTTACAATT
GGTGGCAAAGTATTTGACCTTGCACCAAATGAGTATGTTCTTGAAGTGGG
AGAGGGAGTTGCAGCCCAATGCATCAGTGGATTTACTGCTTTCGATGTGG
CCCCTCCGCGTGGTCCTCTGTGGATTCTGGGAGATGTTTTCATGGGTCGC
TATCACACTGTGTTCGACTACGGCAACTTGTCTATTGGATTCGCCGAAGC
AGCTTGAACAAAATCCACTGGCTTCGTCCATTTCCATAACTAGCTTGTTG
TAATAATTATATACACATGCATACATACATATATATGTGTATATATGTGT
GTGTTTGTGTCTCTGTGTGTGTATTATAATCCAGTCCAGGATCGGACTTT
ATTAGAATCCGGAAAGGTTATTAAACCGTGCGGTTTAGGTTTATAGCATA
ATGCCATTCTACTA
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