CX046805

Overview
NameCX046805
Unique NameCX046805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9396 contig Csv1_Contig9396:263..1091. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046805 vs. ExPASy Swiss-Prot
Match: CML36_ARATH (Probable calcium-binding protein CML36 OS=Arabidopsis thaliana GN=CML36 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.190e-44
Identity = 106/219 (48.40%), Postives = 132/219 (60.27%), Query Frame = 2
Query:   77 IEKLSPKRLFRSKSKKXXXXXXXXXXXXXXXXXXXXXXXHNKLGSAPDRVGTPTSVLHEISGDWSDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEP-ELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQR 730
            + KL PKR F     +                        N  G       TPTS+L E+   +S +          E++QA KL+DRDNDG V R +LE+LL RLG DP T+EE+  ML EVD +GDG I LE L SRV   S +PA +  ELKETF+FFDAD DG I+A+EL  VF+ +GDE CTLDDC+ MIA VD++GDGFVCF +FSRMM+LQR
Sbjct:    3 LAKLIPKRFFIRSKDRSTVSKSPTAFSFGSASSSSGQDCKNSGGDGGGGSVTPTSILPEVPSPYSYV----------EILQAFKLIDRDNDGAVSRHDLESLLSRLGPDPLTEEEINVMLKEVDCDGDGTIRLEELASRV--VSLDPARDSTELKETFEFFDADRDGLISADELLRVFSTIGDERCTLDDCKRMIADVDEDGDGFVCFTEFSRMMDLQR 209          
BLAST of CX046805 vs. ExPASy Swiss-Prot
Match: CML35_ARATH (Probable calcium-binding protein CML35 OS=Arabidopsis thaliana GN=CML35 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.742e-41
Identity = 105/215 (48.84%), Postives = 126/215 (58.60%), Query Frame = 2
Query:   77 IEKLSPKRLFRSKSKKXXXXXXXXXXXXXXXXXXXXXXXHNKLGSAPDRVGTPTSVLHEISGDWSDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPE-LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 718
            + +LSPKRLFR+KSK                         N L   P    TP SVL + SGD+             ELVQA KL+DRD+DGVV R +L AL+ RL  +PP+QEEV  ML EVD    G I LE L SRV  +S E + E E L+E F+ FD D +GKI+AEEL  VF  +GDE CTL++C  MIA VD NGDGFVCF+DF RMM
Sbjct:    7 LNRLSPKRLFRTKSKASVSRSEPSSFSSNASSSSSDGSYGN-LKQGP--TATPISVLPQNSGDFYT-----------ELVQAFKLIDRDDDGVVSRGDLAALISRLSHEPPSQEEVSLMLREVDGGDGGCISLEDLASRVAGTSGEGSVETEELREVFEIFDVDRNGKISAEELHRVFGVIGDERCTLEECMRMIATVDGNGDGFVCFDDFCRMM 207          
BLAST of CX046805 vs. ExPASy Swiss-Prot
Match: CML25_ARATH (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.552e-20
Identity = 55/139 (39.57%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  308 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 724
            EL    K  D + DG +   EL A++  LG + P +EE++  ++E+DR+GDGYI  E  +        +      LK+ F  +D D +G I+AEEL  V   LGDE C++ +CR MI  VDK+GDG + FE+F  MM +
Sbjct:   37 ELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVP-EEELEKAITEIDRKGDGYINFEEFVELNTKGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRSLGDE-CSIAECRKMIGGVDKDGDGTIDFEEFKIMMTM 173          
BLAST of CX046805 vs. ExPASy Swiss-Prot
Match: CML23_ARATH (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.259e-19
Identity = 50/130 (38.46%), Postives = 83/130 (63.85%), Query Frame = 2
Query:  335 DRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALIS--RVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 718
            D++NDG +   EL+ ++  L  +  +QEE K+M+ E D +G+G+I L+  ++  ++ + S   +   +LKE FD +D D +G+I+A EL  V   LG++ C++ DC+ MI  VD +GDG V FE+F +MM
Sbjct:   24 DKNNDGKISIDELKDVIGALSPNA-SQEETKAMMKEFDLDGNGFIDLDEFVALFQISDQSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLGEK-CSIQDCQRMINKVDSDGDGCVDFEEFKKMM 151          
BLAST of CX046805 vs. ExPASy Swiss-Prot
Match: CML16_ORYSJ (Probable calcium-binding protein CML16 OS=Oryza sativa subsp. japonica GN=CML16 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.267e-18
Identity = 55/141 (39.01%), Postives = 81/141 (57.45%), Query Frame = 2
Query:  308 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQE----EVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 718
            E+ +     D D DG +  SEL A+  R  A PP++     EV +M++E+D + DG++ L    +  G    +   E EL+  FD +D D DG+ITA EL  V  ++G E C+ ++C  MIA VD +GDG V FE+F +MM
Sbjct:   27 EIERVFTRFDADGDGRISPSELAAVT-RAIAPPPSESAGGREVAAMMNELDTDRDGFVDLGEFAAFHGRGRGDAEHEAELRAAFDVYDVDGDGRITAAELGKVLGRIG-EGCSAEECERMIASVDVDGDGCVGFEEFKKMM 165          
BLAST of CX046805 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.267e-18
Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = 2
Query:  308 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPAC-EPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 718
            E+ +  +  D + DG + RSEL AL   LG    T +E+  M++E D +GDG+I L+   +    +S + A  E +L+  F  FDAD +G I+A EL  V   LG++  T+  CR MI  VD+NGDG + FE+F  MM
Sbjct:   40 EMERVFRKFDANGDGRISRSELGALFESLG-HAATDDELARMMAEADADGDGFISLDEFAALNATASGDAAAVEEDLRHAFRVFDADGNGTISAAELARVLHGLGEK-ATVQQCRRMIEGVDQNGDGLISFEEFKVMM 175          
BLAST of CX046805 vs. ExPASy Swiss-Prot
Match: CALM_PARTE (Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 7.267e-18
Identity = 55/148 (37.16%), Postives = 83/148 (56.08%), Query Frame = 2
Query:  275 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 718
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     +S +     E   E EL E F  FD D +G I+A EL  V T LG++L T D+   MI   D +GDG + +E+F RMM
Sbjct:    1 MAEQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKL-TDDEVDEMIREADIDGDGHINYEEFVRMM 146          
BLAST of CX046805 vs. ExPASy Swiss-Prot
Match: CALM_FAGSY (Calmodulin OS=Fagus sylvatica GN=CAMF1 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 9.491e-18
Identity = 53/148 (35.81%), Postives = 84/148 (56.76%), Query Frame = 2
Query:  275 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 718
            M+  ++ D   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVDR+G+G I     ++ +     +   E ELKE F  FD D +G I+A EL  V T LG++L   D+   MI   D +GDG + +E+F ++M
Sbjct:    1 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP-TEAELQDMINEVDRDGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKL--TDEVDEMIREADVDGDGQINYEEFVKVM 145          
BLAST of CX046805 vs. ExPASy Swiss-Prot
Match: POLC2_JUNOX (Polcalcin Jun o 2 OS=Juniperus oxycedrus PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.240e-17
Identity = 56/154 (36.36%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  260 GDWSDMSADISLDMN-YELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 718
            G  S  S ++ ++ + +EL +  K  D + DG +  SEL  +L  LG+D   + EVK+M+ E D +GDGY+ L+  +  + N     A   +LK  F  FD D +G I+A EL      +G E CT+++ + +I  VDKNGDG +  E+F  MM
Sbjct:    9 GSKSACSGEVVMEQSVHELEEVFKKFDANGDGKISGSELADILRSLGSDVG-EAEVKAMMEEADADGDGYVSLQEFVD-LNNKG---ASVKDLKNAFKVFDRDCNGSISAAELCHTLESVG-EPCTIEESKNIIHNVDKNGDGLISVEEFQTMM 156          
BLAST of CX046805 vs. ExPASy Swiss-Prot
Match: CALM_RENRE (Calmodulin OS=Renilla reniformis PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.240e-17
Identity = 53/148 (35.81%), Postives = 84/148 (56.76%), Query Frame = 2
Query:  275 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 718
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +GDG I     ++ +     +   E E++E F  FD D DG I+A EL  V T LG++L T ++   MI   D +GDG V +E+F +MM
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGDGFISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDGQVNYEEFVKMM 146          
The following BLAST results are available for this feature:
BLAST of CX046805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
CML36_ARATH1.190e-4448.40Probable calcium-binding protein CML36 OS=Arabidop... [more]
CML35_ARATH2.742e-4148.84Probable calcium-binding protein CML35 OS=Arabidop... [more]
CML25_ARATH4.552e-2039.57Probable calcium-binding protein CML25 OS=Arabidop... [more]
CML23_ARATH2.259e-1938.46Probable calcium-binding protein CML23 OS=Arabidop... [more]
CML16_ORYSJ7.267e-1839.01Probable calcium-binding protein CML16 OS=Oryza sa... [more]
CML10_ORYSJ7.267e-1839.86Probable calcium-binding protein CML10 OS=Oryza sa... [more]
CALM_PARTE7.267e-1837.16Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 S... [more]
CALM_FAGSY9.491e-1835.81Calmodulin OS=Fagus sylvatica GN=CAMF1 PE=2 SV=3[more]
POLC2_JUNOX1.240e-1736.36Polcalcin Jun o 2 OS=Juniperus oxycedrus PE=1 SV=2[more]
CALM_RENRE1.240e-1735.81Calmodulin OS=Renilla reniformis PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_10C10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10C10-F19-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046805 ID=CX046805; Name=CX046805; organism=Citrus sinensis; type=EST; length=829bp
CTTCTCTTTCCTCTTTTCCCCTTCACGAGAAACTCGAATTCGTCTTTTCT
TTCTTCGCGTTTCGGAAATGAAACTCATCGAGAAGCTCAGCCCGAAACGT
CTCTTCCGGTCCAAGTCCAAGAAGGACCGGACCAGCGTTTCGCGTTCTGA
CCCATCATCGTTCAGCTCGTCCTCTACCTCCGACTCGTCCACCCACAACA
AACTCGGTTCGGCGCCGGACAGAGTCGGGACGCCAACGAGTGTCTTACAC
GAGATATCGGGTGACTGGTCCGACATGTCGGCCGATATCTCGCTAGATAT
GAACTACGAGCTCGTCCAGGCGTGTAAGTTGCTCGACAGGGACAACGACG
GGGTGGTGTTGAGAAGCGAGCTGGAGGCGCTCTTGATCCGGCTCGGAGCG
GACCCGCCGACCCAAGAGGAGGTCAAGTCGATGCTGAGCGAGGTGGATCG
GGAGGGCGACGGGTATATACCCTTGGAGGCGCTGATTAGCCGGGTCGGGA
ACTCGTCCTGCGAGCCGGCTTGTGAACCGGAGCTCAAGGAGACGTTTGAC
TTCTTTGACGCGGATCACGATGGTAAGATCACGGCCGAGGAGTTGTTCGG
TGTTTTCACCAAATTAGGGGACGAGCTGTGCACGTTAGACGACTGCCGGG
GCATGATAGCGCTGGTGGATAAAAACGGGGATGGGTTCGTCTGCTTCGAG
GACTTTTCAAGGATGATGGAGTTGCAGAGATGATCGTGATTATATTGTTA
TCTATACATAAATCAATATGTTTTTAAAACACCCCGTGATGATAATGATG
ATCATGTGNATATGTTTCCTCCTCTTGAT
back to top