CX046804

Overview
NameCX046804
Unique NameCX046804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046804_ssr169 microsatellite CX046804_ssr169:169..186. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX046804 vs. ExPASy Swiss-Prot
Match: CML36_ARATH (Probable calcium-binding protein CML36 OS=Arabidopsis thaliana GN=CML36 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.889e-43
Identity = 91/142 (64.08%), Postives = 111/142 (78.17%), Query Frame = -3
Query:  320 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEP-ELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQR 742
            E++QA KL+DRDNDG V R +LE+LL RLG DP T+EE+  ML EVD +GDG I LE L SRV   S +PA +  ELKETF+FFDAD DG I+A+EL  VF+ +GDE CTLDDC+ MIA VD++GDGFVCF +FSRMM+LQR
Sbjct:   70 EILQAFKLIDRDNDGAVSRHDLESLLSRLGPDPLTEEEINVMLKEVDCDGDGTIRLEELASRV--VSLDPARDSTELKETFEFFDADRDGLISADELLRVFSTIGDERCTLDDCKRMIADVDEDGDGFVCFTEFSRMMDLQR 209          
BLAST of CX046804 vs. ExPASy Swiss-Prot
Match: CML35_ARATH (Probable calcium-binding protein CML35 OS=Arabidopsis thaliana GN=CML35 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.634e-37
Identity = 84/142 (59.15%), Postives = 100/142 (70.42%), Query Frame = -3
Query:  332 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPE-LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 754
            D   ELVQA KL+DRD+DGVV R +L AL+ RL  +PP+QEEV  ML EVD    G I LE L SRV  +S E + E E L+E F+ FD D +GKI+AEEL  VF  +GDE CTL++C  MIA VD NGDGFVCF+DF RMM
Sbjct:   66 DFYTELVQAFKLIDRDDDGVVSRGDLAALISRLSHEPPSQEEVSLMLREVDGGDGGCISLEDLASRVAGTSGEGSVETEELREVFEIFDVDRNGKISAEELHRVFGVIGDERCTLEECMRMIATVDGNGDGFVCFDDFCRMM 207          
BLAST of CX046804 vs. ExPASy Swiss-Prot
Match: CML25_ARATH (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.043e-20
Identity = 55/139 (39.57%), Postives = 80/139 (57.55%), Query Frame = -3
Query:  326 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 742
            EL    K  D + DG +   EL A++  LG + P +EE++  ++E+DR+GDGYI  E  +        +      LK+ F  +D D +G I+AEEL  V   LGDE C++ +CR MI  VDK+GDG + FE+F  MM +
Sbjct:   37 ELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVP-EEELEKAITEIDRKGDGYINFEEFVELNTKGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRSLGDE-CSIAECRKMIGGVDKDGDGTIDFEEFKIMMTM 173          
BLAST of CX046804 vs. ExPASy Swiss-Prot
Match: CML23_ARATH (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.006e-19
Identity = 50/130 (38.46%), Postives = 83/130 (63.85%), Query Frame = -3
Query:  332 DRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALIS--RVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 715
            D++NDG +   EL+ ++  L  +  +QEE K+M+ E D +G+G+I L+  ++  ++ + S   +   +LKE FD +D D +G+I+A EL  V   LG++ C++ DC+ MI  VD +GDG V FE+F +MM
Sbjct:   24 DKNNDGKISIDELKDVIGALSPNA-SQEETKAMMKEFDLDGNGFIDLDEFVALFQISDQSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLGEK-CSIQDCQRMINKVDSDGDGCVDFEEFKKMM 151          
BLAST of CX046804 vs. ExPASy Swiss-Prot
Match: CML16_ORYSJ (Probable calcium-binding protein CML16 OS=Oryza sativa subsp. japonica GN=CML16 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.455e-18
Identity = 55/141 (39.01%), Postives = 81/141 (57.45%), Query Frame = -3
Query:  332 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQE----EVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 742
            E+ +     D D DG +  SEL A+  R  A PP++     EV +M++E+D + DG++ L    +  G    +   E EL+  FD +D D DG+ITA EL  V  ++G E C+ ++C  MIA VD +GDG V FE+F +MM
Sbjct:   27 EIERVFTRFDADGDGRISPSELAAVT-RAIAPPPSESAGGREVAAMMNELDTDRDGFVDLGEFAAFHGRGRGDAEHEAELRAAFDVYDVDGDGRITAAELGKVLGRIG-EGCSAEECERMIASVDVDGDGCVGFEEFKKMM 165          
BLAST of CX046804 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.455e-18
Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = -3
Query:  332 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPAC-EPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 742
            E+ +  +  D + DG + RSEL AL   LG    T +E+  M++E D +GDG+I L+   +    +S + A  E +L+  F  FDAD +G I+A EL  V   LG++  T+  CR MI  VD+NGDG + FE+F  MM
Sbjct:   40 EMERVFRKFDANGDGRISRSELGALFESLG-HAATDDELARMMAEADADGDGFISLDEFAALNATASGDAAAVEEDLRHAFRVFDADGNGTISAAELARVLHGLGEK-ATVQQCRRMIEGVDQNGDGLISFEEFKVMM 175          
BLAST of CX046804 vs. ExPASy Swiss-Prot
Match: CALM_PARTE (Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 6.455e-18
Identity = 55/148 (37.16%), Postives = 83/148 (56.08%), Query Frame = -3
Query:  332 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 775
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     +S +     E   E EL E F  FD D +G I+A EL  V T LG++L T D+   MI   D +GDG + +E+F RMM
Sbjct:    1 MAEQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKL-TDDEVDEMIREADIDGDGHINYEEFVRMM 146          
BLAST of CX046804 vs. ExPASy Swiss-Prot
Match: CALM_FAGSY (Calmodulin OS=Fagus sylvatica GN=CAMF1 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 8.430e-18
Identity = 53/148 (35.81%), Postives = 84/148 (56.76%), Query Frame = -3
Query:  332 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 775
            M+  ++ D   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVDR+G+G I     ++ +     +   E ELKE F  FD D +G I+A EL  V T LG++L   D+   MI   D +GDG + +E+F ++M
Sbjct:    1 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP-TEAELQDMINEVDRDGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKL--TDEVDEMIREADVDGDGQINYEEFVKVM 145          
BLAST of CX046804 vs. ExPASy Swiss-Prot
Match: CALM_RENRE (Calmodulin OS=Renilla reniformis PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.101e-17
Identity = 53/148 (35.81%), Postives = 84/148 (56.76%), Query Frame = -3
Query:  332 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 775
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +GDG I     ++ +     +   E E++E F  FD D DG I+A EL  V T LG++L T ++   MI   D +GDG V +E+F +MM
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGDGFISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDGQVNYEEFVKMM 146          
BLAST of CX046804 vs. ExPASy Swiss-Prot
Match: CML18_ORYSJ (Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica GN=CML18 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.878e-17
Identity = 57/149 (38.26%), Postives = 84/149 (56.38%), Query Frame = -3
Query:  332 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALIS-----------RVGNSSC-EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 742
            EL Q  +  D + DG +   EL ++L  LGA P    EV+ M+ E+D + DG++ L    +           + G++   E A E EL+E F  +DAD +GKI+A EL  V  +LGD+ C++ DC  MI  VD +GDG V F++F +MM
Sbjct:    5 ELEQVFRRYDANGDGKISAEELASVLRALGA-PLGPGEVRRMMDEMDSDRDGFVDLSEFAAFHCGPTPAHGGKGGDAKDQEAASEAELREAFRMYDADSNGKISARELHRVLRQLGDK-CSVADCSRMIRSVDADGDGCVNFDEFKKMM 151          
The following BLAST results are available for this feature:
BLAST of CX046804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
CML36_ARATH9.889e-4364.08Probable calcium-binding protein CML36 OS=Arabidop... [more]
CML35_ARATH1.634e-3759.15Probable calcium-binding protein CML35 OS=Arabidop... [more]
CML25_ARATH4.043e-2039.57Probable calcium-binding protein CML25 OS=Arabidop... [more]
CML23_ARATH2.006e-1938.46Probable calcium-binding protein CML23 OS=Arabidop... [more]
CML16_ORYSJ6.455e-1839.01Probable calcium-binding protein CML16 OS=Oryza sa... [more]
CML10_ORYSJ6.455e-1839.86Probable calcium-binding protein CML10 OS=Oryza sa... [more]
CALM_PARTE6.455e-1837.16Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 S... [more]
CALM_FAGSY8.430e-1835.81Calmodulin OS=Fagus sylvatica GN=CAMF1 PE=2 SV=3[more]
CALM_RENRE1.101e-1735.81Calmodulin OS=Renilla reniformis PE=1 SV=2[more]
CML18_ORYSJ1.878e-1738.26Probable calcium-binding protein CML18 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10C10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10C10-F19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046804 ID=CX046804; Name=CX046804; organism=Citrus sinensis; type=EST; length=777bp
TTTTTTTTTTTTTTTTTCCCAAAATCTTTAAAATATCATTATCATGAAAG
CAACAATCACCCAATCTCTCGATGTGATCAACTGATCGCTGATCAAAATT
ATTCTTATGCGCCAAATAACAATAATAATAAAAATAAAAGAAAAATAAAA
CATTAGCAAATATATATAAATAATAATAATAATAATCAAGGAAAAAATTA
ACCGACTTTGGTTTTATACGATCAAGAGGAGGAAACATAATCACATGATC
ATCATTATCATCACGGGGTGTTTTAAAAACATATTGATTTATGTATAGAT
AACAATATAATCACGATCATCTCTGCAACTCCATCATCCTTGAAAAGTCC
TCGAAGCAAACAAACCCATCCCCGTTTTTATCCACCAGCGCTATCATGCC
CCGGCAGTCGTCTAACGTGCACAGCTCGTCCCCTAATTTGGTGAAAACAC
CGAACAACTCCTCGGCCGTGATCTTACCATCGTGATCCGCGTCAAAAAAG
TCAAACGTCTCCTTGAGCTCCGGTTCACAAGCCGGCTCGCAGGACGAGTT
CCCGACCCGGCTAATCAGCGCCTCCAAGGGTATATACCCGTCGCCCTCCC
GATCCACCTCGCTCAGCATCGACTTGACCTCCTCTTGGGTCGGCGGGTCC
GCTCCGAGCCGGATCAAGAGCGCCTCCAGCTCGCTTCTCAACACCACCCC
GTCGTTGTCCCTGTCGAGCAACTTACACGCCTGGACGAGCTCGTAGTTCA
TATCTAGCGAGATATCGGCCGACATGT
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