CX046795

Overview
NameCX046795
Unique NameCX046795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12003 contig Csv1_Contig12003:566..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046795 vs. ExPASy Swiss-Prot
Match: WDR36_HUMAN (WD repeat-containing protein 36 OS=Homo sapiens GN=WDR36 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.501e-20
Identity = 47/134 (35.07%), Postives = 71/134 (52.99%), Query Frame = 1
Query:   34 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFQGR 429
            P+  F   E RE DW  ++ CH        W  Q   +G + L+P    ++     A  I++CGNFAV+G + G ++ +N+QSGI RGS+       + AH G V GVA D  N L ++ G  G +K W+F+ +
Sbjct:  443 PITKFAAEEARESDWDGIIACHQGKLSCSTWNYQKSTIGAYFLKPKELKKDDITATAVDITSCGNFAVIGLSSGTVDVYNMQSGIHRGSF-----GKDQAHKGSVRGVAVDGLNQLTVTTGSEGLLKFWNFKNK 571          
BLAST of CX046795 vs. ExPASy Swiss-Prot
Match: YC47_SCHPO (Uncharacterized WD repeat-containing protein C1672.07 OS=Schizosaccharomyces pombe GN=SPCC1672.07 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.525e-16
Identity = 41/128 (32.03%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   37 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 420
            + A   +  RE+ W NV+T H + + A  W  ++  LG+H+L     + T+V++  +S CGNF ++G++ G ++ +N+QSGI R S+   S          V  V  D+ N ++++A   G +K WDF
Sbjct:  398 ITALSSSNTREKYWDNVLTAHKNDSSARTWNWKSKTLGQHVLPT--SDGTSVRSVCVSCCGNFGLIGSSKGVVDVYNMQSGIKRKSFGQSS-----LSGKPVTAVMLDNVNRILVTASLDGILKFWDF 518          
BLAST of CX046795 vs. ExPASy Swiss-Prot
Match: UTP21_YEAST (U3 small nucleolar RNA-associated protein 21 OS=Saccharomyces cerevisiae GN=UTP21 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.273e-11
Identity = 39/128 (30.47%), Postives = 60/128 (46.88%), Query Frame = 1
Query:   37 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 420
            ++A      R  +W N++T H D   A  W ++N  +G        +    VK+  +S CGNF  +G++ G I  +N+QSGI R  Y          H   V G++ D  N  M+S G  G +  +DF
Sbjct:  414 IVALAIENARIGEWENIITAHKDEKFARTWDMRNKRVGRWTFDTTDDG--FVKSVAMSQCGNFGFIGSSNGSITIYNMQSGILRKKY--------KLHKRAVTGISLDGMNRKMVSCGLDGIVGFYDF 531          
The following BLAST results are available for this feature:
BLAST of CX046795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
WDR36_HUMAN1.501e-2035.07WD repeat-containing protein 36 OS=Homo sapiens GN... [more]
YC47_SCHPO6.525e-1632.03Uncharacterized WD repeat-containing protein C1672... [more]
UTP21_YEAST1.273e-1130.47U3 small nucleolar RNA-associated protein 21 OS=Sa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_10C05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10C05-F9-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046795 ID=CX046795; Name=CX046795; organism=Citrus sinensis; type=EST; length=434bp
CTCAAAATGAAGGAAGAGGAGTTGAAATTAAAGCCCGTTATTGCATTTGA
TTGTGCTGAAATTAGGGAGCGGGATTGGTGCAACGTTGTTACATGTCATA
TGGATACTGCACAGGCATATGTGTGGAGGCTTCAAAACTTCGTTCTTGGT
GAGCACATCCTGAGACCATGTCCAGAAAATCCAACAGCTGTCAAGGCCTG
CACTATCAGTGCATGTGGAAATTTTGCTGTTCTTGGAACAGCCGGTGGTT
GGATTGAACGATTTAACCTTCAATCAGGAATCAGCCGAGGAAGTTATCTG
GACATGTCAGAAAGAAGCAACTATGCCCATAATGGTGAAGTGGTTGGAGT
TGCTTGTGACTCAACAAATACTCTAATGATTAGTGCTGGATATCACGGTG
ATATAAAGGTTTGGGATTTCCAGGGACGTGATCT
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