CX046792

Overview
NameCX046792
Unique NameCX046792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8229 contig Csv1_Contig8229:4..556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046792 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 7.375e-74
Identity = 143/167 (85.63%), Postives = 146/167 (87.43%), Query Frame = 3
Query:   51 MGQGTPGGLNRQXXXXXXXXXXXXXXXXXFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVG 551
            MGQG  GGLNRQ                 FEPAAPPARVGRKQRKQKGPEAAARLPTVTP +KCKLRLLKLERIKDYLLMEEEFV NQERLKPQEEKAEEDRSKVDDLRG+PMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG
Sbjct:    1 MGQGPSGGLNRQGDRKPDGGEKKEKK---FEPAAPPARVGRKQRKQKGPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVG 164          
BLAST of CX046792 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 7.375e-74
Identity = 143/167 (85.63%), Postives = 146/167 (87.43%), Query Frame = 3
Query:   51 MGQGTPGGLNRQXXXXXXXXXXXXXXXXXFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVG 551
            MGQG  GGLNRQ                 FEPAAPPARVGRKQRKQKGPEAAARLPTVTP +KCKLRLLKLERIKDYLLMEEEFV NQERLKPQEEKAEEDRSKVDDLRG+PMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG
Sbjct:    1 MGQGPSGGLNRQGDRKPDGGDKKEKK---FEPAAPPARVGRKQRKQKGPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVG 164          
BLAST of CX046792 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 2.298e-67
Identity = 129/169 (76.33%), Postives = 141/169 (83.43%), Query Frame = 3
Query:   51 MGQGTPGGLNRQXXXXXXXXXXXXXXXXX--FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVG 551
            MGQGTPGG+ +Q                   FEP A P+RVGRKQRKQKGPEAAARLP V PLSKC+LRLLKLER+KDYLLMEEEFV  QERL+P E+K EEDRSKVDDLRG+PMSVG+LEE+IDE+HAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG
Sbjct:    1 MGQGTPGGMGKQGGAPGDRKPGGDGDKKDRKFEPPAAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLLKLERVKDYLLMEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVG 169          
BLAST of CX046792 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 1.888e-53
Identity = 99/138 (71.74%), Postives = 125/138 (90.58%), Query Frame = 3
Query:  138 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVG 551
            +EP  P  RVG+K+R+ KGP+AA +LP VTP ++C+L+LLKLERIKDYL+ME+EF+ NQERLKPQ+EK EE+RSKVDDLRG+PMSVGNLEE+ID+NHAIVS+SVG E+YV ILSFVDKDQLEPGC++L+++KV +VVG
Sbjct:   24 YEPPIP-TRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVG 160          
BLAST of CX046792 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.353e-51
Identity = 96/138 (69.57%), Postives = 123/138 (89.13%), Query Frame = 3
Query:  138 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVG 551
            +EP  P  RVG+K++K KGP+AA++LP VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD LEPGC++L+++KV +V+G
Sbjct:   25 YEPPVP-TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIG 161          
BLAST of CX046792 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.353e-51
Identity = 96/138 (69.57%), Postives = 123/138 (89.13%), Query Frame = 3
Query:  138 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVG 551
            +EP  P  RVG+K++K KGP+AA++LP VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD LEPGC++L+++KV +V+G
Sbjct:   25 YEPPVP-TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIG 161          
BLAST of CX046792 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.353e-51
Identity = 96/138 (69.57%), Postives = 123/138 (89.13%), Query Frame = 3
Query:  138 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVG 551
            +EP  P  RVG+K++K KGP+AA++LP VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD LEPGC++L+++KV +V+G
Sbjct:   25 YEPPVP-TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIG 161          
BLAST of CX046792 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 8.772e-51
Identity = 95/138 (68.84%), Postives = 122/138 (88.41%), Query Frame = 3
Query:  138 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVG 551
            +EP  P  RVG+K++K KGP+AA++ P VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD LEPGC++L+++KV +V+G
Sbjct:   25 YEPPVP-TRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIG 161          
BLAST of CX046792 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.120e-48
Identity = 85/132 (64.39%), Postives = 120/132 (90.91%), Query Frame = 3
Query:  156 PARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVG 551
            P+R+G+K++  KGP+AA++LP VTP ++C+L+LLK ERIKDYLLME+EF+ NQERLKPQEE+ EE+R+KVD+LRG+PM+VG+LEE+ID+ HAIVS++VG E+YV I+SFVDK+QLEPGC++L+++K  +V+G
Sbjct:   33 PSRIGKKKKGSKGPDAASKLPAVTPHARCRLKLLKSERIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIG 164          
BLAST of CX046792 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.951e-48
Identity = 85/138 (61.59%), Postives = 119/138 (86.23%), Query Frame = 3
Query:  138 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVG 551
            +EP  P     RK++ Q GP+A+A+LPTV P ++C+LRLLK++RI D+LLMEEE+V NQERLKPQ+E+ +E+R++VD++RG+PMSVG LEE+ID++HAIVS++ GPEYYV I+SFVDKD LEPGC++L+H+K +S+VG
Sbjct:   31 YEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVG 167          
The following BLAST results are available for this feature:
BLAST of CX046792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PRS4B_ARATH7.375e-7485.6326S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4A_ARATH7.375e-7485.6326S proteasome regulatory subunit 4 homolog A OS=A... [more]
PRS4_ORYSJ2.298e-6776.3326S protease regulatory subunit 4 homolog OS=Oryza... [more]
PRS4_DROME1.888e-5371.7426S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS4_RAT1.353e-5169.5726S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE1.353e-5169.5726S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN1.353e-5169.5726S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_CHICK8.772e-5168.8426S protease regulatory subunit 4 OS=Gallus gallus... [more]
PRS4_CAEEL3.120e-4864.39Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PRS4_SCHPO6.951e-4861.5926S protease regulatory subunit 4 homolog OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10C02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10C02-F3-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046792 ID=CX046792; Name=CX046792; organism=Citrus sinensis; type=EST; length=553bp
TCTCGCTTTTATTCTCTCACTTAATCGAATTCGAAATCTAGTGTGAAGCC
ATGGGTCAGGGAACACCGGGAGGTCTGAACCGGCAAGGTCCAGGAGGTGA
CCGCAAGGGTGATGGAGCGGATAAGAAAGATAAAAAATTCGAGCCTGCAG
CTCCTCCGGCCCGTGTGGGCCGCAAGCAACGAAAGCAGAAAGGACCAGAA
GCGGCGGCACGCCTTCCGACCGTTACGCCGCTGAGTAAGTGCAAGCTGAG
GCTTTTAAAGCTTGAGAGGATAAAAGATTATCTCTTGATGGAAGAGGAGT
TTGTTACGAATCAGGAGAGATTGAAGCCGCAGGAAGAGAAGGCGGAGGAA
GATCGGTCAAAGGTTGACGATCTGAGAGGTTCGCCGATGAGCGTTGGTAA
TTTGGAGGAGTTGATTGATGAGAATCACGCCATTGTTTCGTCGTCGGTGG
GGCCCGAGTATTACGTCGGGATTTTGTCCTTTGTTGATAAGGATCAGCTG
GAGCCTGGCTGTGCTATTTTGATGCACAATAAGGTCCTTTCGGTGGTTGG
GCT
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