CX046788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 3.672e-56 Identity = 101/137 (73.72%), Postives = 113/137 (82.48%), Query Frame = 2 Query: 59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAP 469 MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R HGKDMT+D+TFEFE+KRNRPERYDRN+ ENTL AIKKI KIR ARE +H + R+ L+Q IH+V+AP Sbjct: 1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKLNDDMKELDQNIHMVQAP 137
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_DICDI (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum GN=rlp24 PE=2 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 2.730e-43 Identity = 78/140 (55.71%), Postives = 100/140 (71.43%), Query Frame = 2 Query: 59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAPSVL 478 MR+EKC+FCS VYPGHG+ FVRND K FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+GK+MT D T EFE+KRNRP +YDR L NT+ A+ ++ KI+ RE+ +K RM + Q + L++ PS L Sbjct: 1 MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNGKEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQKKQKLKEINQNLSLIRGPSAL 140
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_RAT (Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus GN=Rsl24d1 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.402e-39 Identity = 69/137 (50.36%), Postives = 99/137 (72.26%), Query Frame = 2 Query: 59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAP 469 MR+EKC+FCS +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+ GK++T D++FEFE++RN P +Y R L T+ A+K++++I+ R+ + R+ ++Q IHL++AP Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQRRQAKFIMNRLKKNKELQKVQDIREVKQNIHLIRAP 137
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_MOUSE (Probable ribosome biogenesis protein RLP24 OS=Mus musculus GN=Rsl24d1 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.402e-39 Identity = 69/137 (50.36%), Postives = 99/137 (72.26%), Query Frame = 2 Query: 59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAP 469 MR+EKC+FCS +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+ GK++T D++FEFE++RN P +Y R L T+ A+K++++I+ R+ + R+ ++Q IHL++AP Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAP 137
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_BOVIN (Probable ribosome biogenesis protein RLP24 OS=Bos taurus GN=RSL24D1 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.402e-39 Identity = 69/137 (50.36%), Postives = 99/137 (72.26%), Query Frame = 2 Query: 59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAP 469 MR+EKC+FCS +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+ GK++T D++FEFE++RN P +Y R L T+ A+K++++I+ R+ + R+ ++Q IHL++AP Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDVKEVKQNIHLIRAP 137
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_HUMAN (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens GN=RSL24D1 PE=1 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.831e-39 Identity = 69/137 (50.36%), Postives = 99/137 (72.26%), Query Frame = 2 Query: 59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAP 469 MR+EKC+FCS +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+ GK++T D++FEFE++RN P +Y R L T+ A+K++++I+ R+ + R+ ++Q IHL++AP Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAP 137
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_PONAB (Probable ribosome biogenesis protein RLP24 OS=Pongo abelii GN=RSL24D1 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 4.079e-39 Identity = 68/137 (49.64%), Postives = 99/137 (72.26%), Query Frame = 2 Query: 59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAP 469 MR+EKC+FCS +YPGHG+ FVRND K+FRFC+SKCHKNFK +RNPRKV+WTKA+R+ GK++T D++FEFE++RN P +Y R L T+ A+K++++I+ R+ + R+ ++Q IHL++AP Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKRRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAP 137
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_DANRE (Probable ribosome biogenesis protein RLP24 OS=Danio rerio GN=rsl24d1 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 5.327e-39 Identity = 70/137 (51.09%), Postives = 99/137 (72.26%), Query Frame = 2 Query: 59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAP 469 MR+EKC+FCS+ VYPGHG+ FVRND K+FRFCRSKCHKNFK KRNPRK +WTKA+R+ GK++T D++ EFE++RN P +Y+R L T++A++K++ I+ R+ R R+ +++ IHL+KAP Sbjct: 1 MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAGKELTVDNSLEFEKRRNTPVKYNRELWSKTVEAMRKVESIKHKRQARFIMNRLKKGKELEKAADISEVKKNIHLIKAP 137
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_ASHGO (Ribosome biogenesis protein RLP24 OS=Ashbya gossypii GN=RLP24 PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 8.505e-37 Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = 2 Query: 59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAPSVLAQDQS 493 MR+ C FCSS VYPGHGI FVRNDAK FRFCRSKCHK FK +RNPRK+KWTKA+R+ GK++ DST F ++RN P RY+R L E TLKA+ +I++IR RE +K RM +E L+K V Q Q+ Sbjct: 1 MRIYSCHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVETTLKAMTRIEEIRQKRERAFYKNRMKGNTEKDFLRDKKLVESNPELLKMREVELQRQA 145
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_CANGA (Ribosome biogenesis protein RLP24 OS=Candida glabrata GN=RLP24 PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.111e-36 Identity = 70/112 (62.50%), Postives = 86/112 (76.79%), Query Frame = 2 Query: 59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRM 394 MR+ +C FCSS VYPGHGI FVRNDAK FRFCRSKCHKNFK +RNPRK+KWTKA+R+ GK++ DST F ++RN P RY+R L TLKA+ +I++IR RE +K RM Sbjct: 1 MRIYQCHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKNFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSRIEEIRQKRERAFYKNRM 112 The following BLAST results are available for this feature:
BLAST of CX046788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046788 ID=CX046788; Name=CX046788; organism=Citrus sinensis; type=EST; length=797bpback to top |