CX046788

Overview
NameCX046788
Unique NameCX046788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.672e-56
Identity = 101/137 (73.72%), Postives = 113/137 (82.48%), Query Frame = 2
Query:   59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAP 469
            MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HGKDMT+D+TFEFE+KRNRPERYDRN+ ENTL AIKKI KIR ARE +H + R+              L+Q IH+V+AP
Sbjct:    1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKLNDDMKELDQNIHMVQAP 137          
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_DICDI (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum GN=rlp24 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.730e-43
Identity = 78/140 (55.71%), Postives = 100/140 (71.43%), Query Frame = 2
Query:   59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAPSVL 478
            MR+EKC+FCS  VYPGHG+ FVRND K FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+GK+MT D T EFE+KRNRP +YDR L  NT+ A+ ++ KI+  RE+  +K RM              + Q + L++ PS L
Sbjct:    1 MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNGKEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQKKQKLKEINQNLSLIRGPSAL 140          
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_RAT (Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.402e-39
Identity = 69/137 (50.36%), Postives = 99/137 (72.26%), Query Frame = 2
Query:   59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAP 469
            MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  GK++T D++FEFE++RN P +Y R L   T+ A+K++++I+  R+ +    R+              ++Q IHL++AP
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQRRQAKFIMNRLKKNKELQKVQDIREVKQNIHLIRAP 137          
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_MOUSE (Probable ribosome biogenesis protein RLP24 OS=Mus musculus GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.402e-39
Identity = 69/137 (50.36%), Postives = 99/137 (72.26%), Query Frame = 2
Query:   59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAP 469
            MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  GK++T D++FEFE++RN P +Y R L   T+ A+K++++I+  R+ +    R+              ++Q IHL++AP
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAP 137          
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_BOVIN (Probable ribosome biogenesis protein RLP24 OS=Bos taurus GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.402e-39
Identity = 69/137 (50.36%), Postives = 99/137 (72.26%), Query Frame = 2
Query:   59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAP 469
            MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  GK++T D++FEFE++RN P +Y R L   T+ A+K++++I+  R+ +    R+              ++Q IHL++AP
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDVKEVKQNIHLIRAP 137          
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_HUMAN (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.831e-39
Identity = 69/137 (50.36%), Postives = 99/137 (72.26%), Query Frame = 2
Query:   59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAP 469
            MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  GK++T D++FEFE++RN P +Y R L   T+ A+K++++I+  R+ +    R+              ++Q IHL++AP
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAP 137          
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_PONAB (Probable ribosome biogenesis protein RLP24 OS=Pongo abelii GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.079e-39
Identity = 68/137 (49.64%), Postives = 99/137 (72.26%), Query Frame = 2
Query:   59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAP 469
            MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK +RNPRKV+WTKA+R+  GK++T D++FEFE++RN P +Y R L   T+ A+K++++I+  R+ +    R+              ++Q IHL++AP
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKRRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAP 137          
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_DANRE (Probable ribosome biogenesis protein RLP24 OS=Danio rerio GN=rsl24d1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.327e-39
Identity = 70/137 (51.09%), Postives = 99/137 (72.26%), Query Frame = 2
Query:   59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAP 469
            MR+EKC+FCS+ VYPGHG+ FVRND K+FRFCRSKCHKNFK KRNPRK +WTKA+R+  GK++T D++ EFE++RN P +Y+R L   T++A++K++ I+  R+ R    R+              +++ IHL+KAP
Sbjct:    1 MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAGKELTVDNSLEFEKRRNTPVKYNRELWSKTVEAMRKVESIKHKRQARFIMNRLKKGKELEKAADISEVKKNIHLIKAP 137          
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_ASHGO (Ribosome biogenesis protein RLP24 OS=Ashbya gossypii GN=RLP24 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.505e-37
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = 2
Query:   59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMXXXXXXXXXXXXXXLEQGIHLVKAPSVLAQDQS 493
            MR+  C FCSS VYPGHGI FVRNDAK FRFCRSKCHK FK +RNPRK+KWTKA+R+  GK++  DST  F ++RN P RY+R L E TLKA+ +I++IR  RE   +K RM              +E    L+K   V  Q Q+
Sbjct:    1 MRIYSCHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVETTLKAMTRIEEIRQKRERAFYKNRMKGNTEKDFLRDKKLVESNPELLKMREVELQRQA 145          
BLAST of CX046788 vs. ExPASy Swiss-Prot
Match: RLP24_CANGA (Ribosome biogenesis protein RLP24 OS=Candida glabrata GN=RLP24 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.111e-36
Identity = 70/112 (62.50%), Postives = 86/112 (76.79%), Query Frame = 2
Query:   59 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRM 394
            MR+ +C FCSS VYPGHGI FVRNDAK FRFCRSKCHKNFK +RNPRK+KWTKA+R+  GK++  DST  F ++RN P RY+R L   TLKA+ +I++IR  RE   +K RM
Sbjct:    1 MRIYQCHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKNFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSRIEEIRQKRERAFYKNRM 112          
The following BLAST results are available for this feature:
BLAST of CX046788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RLP24_ARATH3.672e-5673.72Probable ribosome biogenesis protein RLP24 OS=Arab... [more]
RLP24_DICDI2.730e-4355.71Probable ribosome biogenesis protein RLP24 OS=Dict... [more]
RLP24_RAT1.402e-3950.36Probable ribosome biogenesis protein RLP24 OS=Ratt... [more]
RLP24_MOUSE1.402e-3950.36Probable ribosome biogenesis protein RLP24 OS=Mus ... [more]
RLP24_BOVIN1.402e-3950.36Probable ribosome biogenesis protein RLP24 OS=Bos ... [more]
RLP24_HUMAN1.831e-3950.36Probable ribosome biogenesis protein RLP24 OS=Homo... [more]
RLP24_PONAB4.079e-3949.64Probable ribosome biogenesis protein RLP24 OS=Pong... [more]
RLP24_DANRE5.327e-3951.09Probable ribosome biogenesis protein RLP24 OS=Dani... [more]
RLP24_ASHGO8.505e-3752.41Ribosome biogenesis protein RLP24 OS=Ashbya gossyp... [more]
RLP24_CANGA1.111e-3662.50Ribosome biogenesis protein RLP24 OS=Candida glabr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B10-D19-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046788 ID=CX046788; Name=CX046788; organism=Citrus sinensis; type=EST; length=797bp
CTCCACCACATTTTGAGCCAATTCCTGAGCTTGAATTTGGTGCTAACTCG
ATAATAAGATGAGATTAGAGAAGTGTTGGTTTTGCTCCTCCACCGTATAT
CCAGGCCATGGTATTCAGTTTGTTCGCAACGATGCCAAGATTTTTCGCTT
CTGTAGATCCAAATGCCACAAGAACTTCAAGATGAAAAGAAATCCTCGTA
AAGTAAAATGGACAAAGGCCTACAGGCGGCTGCACGGGAAGGATATGACT
CAGGACTCTACCTTTGAGTTTGAGAGGAAGCGTAATAGGCCAGAGAGATA
TGACAGAAATCTCGCAGAAAACACTCTGAAGGCAATCAAGAAGATTGATA
AAATCAGAGTAGCCAGGGAGGAGAGACATCATAAACTGAGAATGAAGGGA
AAGAAAGCCAAGGAGCAGAAAGAGGCTGCGATCGAATTGGAGCAGGGCAT
CCACCTGGTCAAGGCCCCATCTGTCCTTGCACAGGACCAATCTCTTACTC
TTCCAAAGATCAAAGTCAAGGTCCAAGCCCAGGCAGAGGAGAATCAAGCC
ATGGAAGAGTAATTTTAAATTGGGGACTCTTCTTGCTTCCTCCATCATAT
TATATCTACCAAAAATTTTGTCCTCAACTCTTTATTTGGGTCTCTGGAAG
TGTGTTGTTCGCTGAATCAATTTCAATTCTGCTCACTAGATTAAACACTT
TATTTGTTGTTTCGTAGTCAGTTCATTGTAAAAAGTTCTGAATTTCATTG
TTTTTGAAAATGTGAATCAACTTATTTCTTCAAAAAAAAAAAAAAAA
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