CX046786

Overview
NameCX046786
Unique NameCX046786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3807 contig Csv1_Contig3807:1..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_MOUSE (Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Giyd1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.301e-26
Identity = 59/141 (41.84%), Postives = 81/141 (57.45%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESFNIKVNYFSTKYSKHSSSCPSLPEHMKV 566
            FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GA RT  R PW+MVL I+GFP+ V+AL+FEWAWQHP  S  +       +S +  A  +++   ML +P W    + + +    +      CP+ P HM +
Sbjct:   10 FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLIIHGFPSAVAALRFEWAWQHPQASRRLTHVGPRLRSEAAFAFHLRVLAHMLRVPPWVRLPLTLRWLRPDF--RHELCPAPPAHMPI 148          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_RAT (Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus GN=Giyd1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.354e-26
Identity = 58/141 (41.13%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESFNIKVNYFSTKYSKHSSSCPSLPEHMKV 566
            FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GA RT  R PW+MVL ++GFP+ V+AL+FEWAWQHP  S  +       +S +     +++   ML +P W    + V +    +      CP+ P HM +
Sbjct:   10 FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLILHGFPSAVAALRFEWAWQHPQASRRLTHVGPRLRSEASFTFHLRVLAHMLRVPPWVRLPLTVRWLRPDF--RHELCPAPPPHMPI 148          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_BOVIN (Structure-specific endonuclease subunit SLX1 OS=Bos taurus GN=GIYD1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.638e-25
Identity = 58/139 (41.73%), Postives = 78/139 (56.12%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESFNIKVNYFSTKYSKHSSSCPSLPEHM 560
            FF  YLL  L PR +G  Y+GFTVNP RR++QHNG   + GA RT  R PWEMVL ++GFP+ V+AL+FEWAWQHP  S  +       +  +  A  +++   ML  P W    + + +    +      CP  P HM
Sbjct:    6 FFGVYLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGFPSAVAALRFEWAWQHPQASRRLTHVGRRLRGEATFAFHLRVLAHMLRAPPWVRLPLTLRWLRADF--RQDLCPPPPPHM 142          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_NEMVE (Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis GN=v1g174298 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.226e-25
Identity = 57/143 (39.86%), Postives = 82/143 (57.34%), Query Frame = 3
Query:  144 GFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEI-RCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFS-GVANKIKLAFTMLNLPNWESFNIKVNYFSTKYSKHSSSCPSLPEHMKV 566
            GF   YLL  + P+FKGHTYIG+TVNP RRI+QHNG + + GA +T +++PW M+L ++GFP ++ ALQFEWAWQ P  S  ++ AA   K     V    ++   +L +  W    + + +   +Y          P HM V
Sbjct:    9 GFHGVYLLYCVNPKFKGHTYIGYTVNPNRRIKQHNGGVDKGGAYKTSRKKPWNMILIVHGFPNDIIALQFEWAWQKPTVSRRLKSAATKKKPRERPVQYCFRILSELLRVGPWNRLPLHIRWLMREYEMEFDPRCLPPFHMTV 151          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_XENLA (Structure-specific endonuclease subunit slx1 OS=Xenopus laevis GN=giyd1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.174e-23
Identity = 58/149 (38.93%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  144 GFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESFNIKVNYFSTKYSKHSSSCPSLPEHMKV---QVRS 578
            GF+  YLL    P++KG  YIGFTVNP RRI+QHNG + + GA +T  R PW+MVL ++GFP +++AL+FEWAWQHP  S  +       K  S     + +   ML +  W    + + +   +Y +        P HM +   QVR+
Sbjct:    7 GFYGVYLLFCTNPKYKGRIYIGFTVNPERRIQQHNGGKHKGGAWKTSGRGPWDMVLIVHGFPNDIAALRFEWAWQHPHVSRRLTHVPRKTKKQSSFDFHLLVLCHMLRVAPWNRLPLTLRWLRQEYRRELPLLLQPPLHMPLAFGQVRA 155          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_HUMAN (Structure-specific endonuclease subunit SLX1 OS=Homo sapiens GN=GIYD1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.533e-23
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNW 476
            FF  YLL  L PR++G  Y+GFTVN  RR++QHNG   + GA RT  R PWEMVL ++GFP++V+AL+FEWAWQHP  S  +       +  +  A  +++   ML  P W
Sbjct:   13 FFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHGFPSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRAPPW 123          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_ANOGA (Structure-specific endonuclease subunit SLX1 homolog OS=Anopheles gambiae GN=AGAP002259 PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 7.610e-23
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  147 FFACYLLTSLCP--RFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVAN---KIKLAFTMLNLPNWESFNIKVNYFSTKYSK 524
            F+  YLL S  P  +F G TYIG+TV+P RRI+QHN GE   GA RT  R PW MVL ++GFP N+SAL+FEWAWQ P  S  ++Q     K     +N     ++   ML +  W    + V +F+ ++ +
Sbjct:   10 FYGVYLLVSKSPNPKFAGRTYIGYTVDPNRRIKQHNRGEDAGGARRTSNRGPWTMVLIVHGFPNNISALRFEWAWQQPRVSRRLKQMPELQKKLRKESNFEYNFRILTEMLRMGPWNRLPLVVRWFADEFHR 141          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_LEIIN (Structure-specific endonuclease subunit SLX1 homolog OS=Leishmania infantum GN=LinJ25.1380 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.414e-22
Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKR-RPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQA 398
            F   YLLTSL P+ +G  YIG+TVNP RR+RQHNGE+  GA RT +R RPW +V C+ GFP + +AL+FEW WQHP  S  +R A
Sbjct:    5 FHCVYLLTSLDPQCEGDFYIGYTVNPLRRLRQHNGELVNGARRTSRRGRPWTIVCCVSGFPDDRAALKFEWCWQHPTASARLRHA 89          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_DROME (Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila melanogaster GN=CG18271 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 8.414e-22
Identity = 59/153 (38.56%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  147 FFACYLLTS--LCPRFKGHTYIGFTVNPRRRIRQHNGEIRC---GAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQ--------AAATFKSFSGVANKIKLAFTMLNLPNWESFNIKVNYFSTKYSKHSSSCPSLPEHMKV 566
            F+  YLL S  L PR++G  Y+GFTVNP+RRIRQHN  + C   GA +T ++ PW MV+ ++GFP N  ALQFEWAWQ P  S  ++            TF  ++      ++   ML +  W    + V +  T Y +  S   +LP+HM++
Sbjct:   23 FYGVYLLCSQSLDPRYRGKCYVGFTVNPKRRIRQHN--LGCDFGGARKTSRKGPWLMVMIVHGFPNNTVALQFEWAWQQPSLSTRLKMYPELKRKLPRETFFDYN-----FRILSNMLGVGPWNRLPLTVRWLETDYERPFSK--ALPKHMEI 166          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_CRYNE (Structure-specific endonuclease subunit SLX1 OS=Cryptococcus neoformans GN=SLX1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21
Identity = 51/130 (39.23%), Postives = 76/130 (58.46%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSF---------SGVANKIKLAFTMLNLPNWESFNIKVNYFS 509
            F+ACYLL S        TY+G T +P RRIRQHNGE++ GA  T + RPWEM + +YGFP+ ++ALQFEWAWQ P  S  +R      + +         + V  K+ +A+ +++L  +    + V +F+
Sbjct:   28 FYACYLLRSKATANSNRTYVGSTPDPPRRIRQHNGELKQGAWSTSRHRPWEMQMIVYGFPSKLAALQFEWAWQKPELSRHLRIRGEDQEYYHIFTKDARRNWVERKVCVAYALISLTPFNRLPLHVRFFN 157          
The following BLAST results are available for this feature:
BLAST of CX046786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
SLX1_MOUSE3.301e-2641.84Structure-specific endonuclease subunit SLX1 OS=Mu... [more]
SLX1_RAT7.354e-2641.13Structure-specific endonuclease subunit SLX1 OS=Ra... [more]
SLX1_BOVIN1.638e-2541.73Structure-specific endonuclease subunit SLX1 OS=Bo... [more]
SLX1_NEMVE6.226e-2539.86Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_XENLA1.174e-2338.93Structure-specific endonuclease subunit slx1 OS=Xe... [more]
SLX1_HUMAN1.533e-2346.85Structure-specific endonuclease subunit SLX1 OS=Ho... [more]
SLX1_ANOGA7.610e-2342.42Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_LEIIN8.414e-2257.65Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_DROME8.414e-2238.56Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_CRYNE1.435e-2139.23Structure-specific endonuclease subunit SLX1 OS=Cr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_10B09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B09-D17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046786 ID=CX046786; Name=CX046786; organism=Citrus sinensis; type=EST; length=844bp
GAGAGAGAAAGATGCGGAAGAGAAAGGGAAGCAAAGCAGTTCATGACCCA
GAAACCCTAATTTCAAAGTCAAAAACTCTAGATCCAGTAAAAGATGATTT
TGAAGAAGAAGACGAAGAACAGAAAGCCAAAGATCAACAAAAAGGGTTCT
TCGCTTGTTATCTTTTAACCTCCTTATGCCCCCGTTTCAAAGGCCACACC
TATATCGGATTCACTGTGAACCCGCGTCGTAGAATTAGGCAGCATAATGG
TGAAATAAGGTGTGGAGCAGTGAGGACGAAGAAAAGGCGCCCTTGGGAAA
TGGTTTTATGCATTTATGGTTTCCCAACAAATGTTTCAGCTCTTCAGTTT
GAGTGGGCTTGGCAGCATCCAATGGAATCACTGGCTGTAAGGCAGGCAGC
TGCTACTTTTAAATCCTTTTCTGGAGTTGCCAATAAAATCAAACTCGCAT
TCACGATGCTCAACCTCCCTAACTGGGAGAGCTTTAACATCAAGGTGAAC
TATTTTTCAACAAAATACTCTAAACATTCTTCTAGTTGCCCAAGCCTGCC
AGAGCACATGAAGGTCCAAGTACGTTCCATGGATGAACTTCCCTGCTATA
CTGAAAGAGATGAGAGTTTGTTAGGGGATGAAGACAGCCTGGGTGATGAG
GACTACAATGAAGCTAGTGAAAACAGTGGAAGTTTAGAGGAAACCTGCGG
AGATGTGACAATTAATTTTTCATCAGATTATTCTTTTAGCATTTATGAGG
CTGCTGATGAACAATGTGGTCAATTTAAGCAATATGGAAATGAGCAGCCA
AGAGACTCATCATGTCTAGAAGTAAACTGCCAACAGCCATTTGG
back to top