DN618421

Overview
NameDN618421
Unique NameDN618421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: PSMD8_PONAB (26S proteasome non-ATPase regulatory subunit 8 OS=Pongo abelii GN=PSMD8 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.567e-26
Identity = 75/188 (39.89%), Postives = 100/188 (53.19%), Query Frame = 1
Query:   73 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYD 627
            +++ K    RK  N   C + L +LK++L     LP     T     +L LARDI E     S+  +D  +FER   QLK YY D  ++LP S   + +          QNR+AEFH             N  IKH V LEQ  MEG+YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC EKAY+
Sbjct:    2 YEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYAFFIDILLDTIRDEIAGCIEKAYE 187          
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: PSMD8_MOUSE (26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.047e-26
Identity = 75/188 (39.89%), Postives = 101/188 (53.72%), Query Frame = 1
Query:   73 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYD 627
            +++ K    RK+ N   C + L +LK++L     LP     T     +L LARDI E     S+  +D  +FER   QLK YY D  ++LP S   + +          QNR+AEFH             N  IKH V LEQ  MEG+YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC EKAY+
Sbjct:    2 YEQLKDEWNRKNPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYE 187          
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: PSMD8_HUMAN (26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.673e-26
Identity = 75/188 (39.89%), Postives = 100/188 (53.19%), Query Frame = 1
Query:   73 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYD 627
            +++ K    RK  N   C + L +LK++L     LP     T     +L LARDI E     S+  +D  +FER   QLK YY D  ++LP S   + +          QNR+AEFH             N  IKH V LEQ  MEG+YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC EKAY+
Sbjct:    2 YEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYE 187          
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: PSMD8_BOVIN (26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.673e-26
Identity = 75/188 (39.89%), Postives = 100/188 (53.19%), Query Frame = 1
Query:   73 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYD 627
            +++ K    RK  N   C + L +LK++L     LP     T     +L LARDI E     S+  +D  +FER   QLK YY D  ++LP S   + +          QNR+AEFH             N  IKH V LEQ  MEG+YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC EKAY+
Sbjct:    2 YEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDIQEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYE 187          
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: PSMD8_DICDI (Probable 26S proteasome non-ATPase regulatory subunit 8 OS=Dictyostelium discoideum GN=psmD8-1 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.467e-24
Identity = 65/196 (33.16%), Postives = 104/196 (53.06%), Query Frame = 1
Query:   55 TEVSQQFDRFKAAMT-RKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIC-ELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXXNPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLS 636
            + + Q  + FK  +    D    T +L QLK+  T     P    +  + +  +L LAR+I E   L S+K++D D+FER F QLK YY D    + PS  EY I          +++ +EFH            N  IK  + +E+S  EG+YN+++ ++  VP+E Y  F+D+LA +++++IA CSEK++  LS
Sbjct:    4 SSIEQNLNNFKKLVAGNSDKAQITPVLVQLKLAATIHLEKPTSLSNVSDKVKKDLVLAREILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLAKHKTSEFHSEIELIEFNNLDNSFIKFPLLVEKSITEGSYNKIIQSRSGVPSEYYQVFLDILADSIKEDIANCSEKSFKTLS 199          
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: RPN12_SCHPO (26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces pombe GN=rpn12 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.054e-17
Identity = 56/177 (31.64%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  100 RKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX--NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAY 624
            RKD+N C + L +LKV L       P  +       + + AR+++E+ VL+S++  D ++F R   Q+ P+Y D+   L PS    ++          +NRIAEFH              +P ++  + LEQ+ MEGA+++V S  ++     + YFM ++   VR+EIA C+EK Y
Sbjct:   15 RKDWNACKKELLKLKVELAKQNLFVPTSDKE-----KASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDS---LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVY 183          
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: PSMD8_CAEEL (26S proteasome non-ATPase regulatory subunit 8 OS=Caenorhabditis elegans GN=rpn-12 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.987e-13
Identity = 52/179 (29.05%), Postives = 90/179 (50.28%), Query Frame = 1
Query:  103 KDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLS 636
            KD     + L++L  +L+    L     D  +A+     ++D+YE +VLL++   D + F+    Q+  YYT A +    S N++++           NR+++FH             N  I   V +EQS MEGAYN+V+  ++N+P+  Y  F+ ++  T+R EIA   EK++  L+
Sbjct:   17 KDLVAVEKALNELTKVLSASSDL----NDKQSALA----SKDLYEISVLLAILKHDFETFDDYINQMHTYYTMAPEN---SENKHLMTGLHLMFLLAANRLSDFHMLLEQIPQKEQTSNAYISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRIMLDTIRREIATSIEKSFKVLT 184          
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: RPN12_YEAST (26S proteasome regulatory subunit RPN12 OS=Saccharomyces cerevisiae GN=RPN12 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.870e-12
Identity = 54/204 (26.47%), Postives = 91/204 (44.61%), Query Frame = 1
Query:   46 PKLTEVSQQFDRFKAAMTRKDYNTCTQLLSQLKV-LLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFH---XXXXXXXXXXXXNPCIKHAVELEQSFMEGAYNR----VLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYL 633
            P L E+++       A    DY  C +LL  +K+ L+     +P L       + +L + + I E   L S++  + D+FE  F QLKPYY     +L  S  +  +          QN   +FH               +  + + ++L++  MEG+Y +    + S  QN+    +  F D+L   +RDEIA  +E +YD+L
Sbjct:    2 PSLAELTKSLS---IAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNI--SEFDSFTDILKSAIRDEIAKNTELSYDFL 200          
The following BLAST results are available for this feature:
BLAST of DN618421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSMD8_PONAB1.567e-2639.8926S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_MOUSE2.047e-2639.8926S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_HUMAN2.673e-2639.8926S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_BOVIN2.673e-2639.8926S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_DICDI1.467e-2433.16Probable 26S proteasome non-ATPase regulatory subu... [more]
RPN12_SCHPO5.054e-1731.6426S proteasome regulatory subunit rpn12 OS=Schizos... [more]
PSMD8_CAEEL1.987e-1329.0526S proteasome non-ATPase regulatory subunit 8 OS=... [more]
RPN12_YEAST2.870e-1226.4726S proteasome regulatory subunit RPN12 OS=Sacchar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02I18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002I18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618421 ID=DN618421; Name=DN618421; organism=Citrus sinensis; type=EST; length=638bp
CTTTAACGCAGGGACGAAGACAAGCACGCAGATTGAGAGATGGATCCAAA
ACTCACAGAAGTTTCTCAGCAGTTTGATCGCTTTAAAGCTGCAATGACTA
GAAAAGACTATAACACATGTACCCAACTCCTCTCTCAACTCAAGGTTCTG
CTGACTGGATTCAGAAGCCTCCCGCCATTGTTTGAAGATACGCCTAATGC
AATATGTGAATTGACGTTAGCTAGGGACATTTACGAGCACGCTGTTCTCC
TAAGTGTGAAGGTGGAGGATCAAGATGCTTTTGAGAGGGATTTTTTTCAA
TTGAAGCCCTATTATACAGATGCTGGGAAGCGCCTTCCACCATCCCCAAA
TGAGTACATGATTTTGGGTCTTAACTTGTTGAGACTCTTAGTCCAGAACA
GAATTGCTGAATTCCATACTGAACTGGAATTGCTTTCATCTACTGCATTG
GAGAATCCTTGCATCAAGCACGCGGTGGAGTTGGAGCAATCATTTATGGA
AGGGGCTTATAATCGTGTCTTGAGTGCCAAACAGAATGTACCTAATGAAA
CTTATGGTTATTTCATGGATCTCCTAGCTAAGACAGTAAGAGATGAGATA
GCTGGATGTAGTGAGAAGGCATATGATTATCTTTCAAT
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