DN618421
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: PSMD8_PONAB (26S proteasome non-ATPase regulatory subunit 8 OS=Pongo abelii GN=PSMD8 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.567e-26 Identity = 75/188 (39.89%), Postives = 100/188 (53.19%), Query Frame = 1 Query: 73 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYD 627 +++ K RK N C + L +LK++L LP T +L LARDI E S+ +D +FER QLK YY D ++LP S + + QNR+AEFH N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L T+RDEIAGC EKAY+ Sbjct: 2 YEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYAFFIDILLDTIRDEIAGCIEKAYE 187
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: PSMD8_MOUSE (26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.047e-26 Identity = 75/188 (39.89%), Postives = 101/188 (53.72%), Query Frame = 1 Query: 73 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYD 627 +++ K RK+ N C + L +LK++L LP T +L LARDI E S+ +D +FER QLK YY D ++LP S + + QNR+AEFH N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L T+RDEIAGC EKAY+ Sbjct: 2 YEQLKDEWNRKNPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYE 187
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: PSMD8_HUMAN (26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.673e-26 Identity = 75/188 (39.89%), Postives = 100/188 (53.19%), Query Frame = 1 Query: 73 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYD 627 +++ K RK N C + L +LK++L LP T +L LARDI E S+ +D +FER QLK YY D ++LP S + + QNR+AEFH N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L T+RDEIAGC EKAY+ Sbjct: 2 YEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYE 187
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: PSMD8_BOVIN (26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 2.673e-26 Identity = 75/188 (39.89%), Postives = 100/188 (53.19%), Query Frame = 1 Query: 73 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYD 627 +++ K RK N C + L +LK++L LP T +L LARDI E S+ +D +FER QLK YY D ++LP S + + QNR+AEFH N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L T+RDEIAGC EKAY+ Sbjct: 2 YEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDIQEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYE 187
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: PSMD8_DICDI (Probable 26S proteasome non-ATPase regulatory subunit 8 OS=Dictyostelium discoideum GN=psmD8-1 PE=2 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.467e-24 Identity = 65/196 (33.16%), Postives = 104/196 (53.06%), Query Frame = 1 Query: 55 TEVSQQFDRFKAAMT-RKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIC-ELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXXNPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLS 636 + + Q + FK + D T +L QLK+ T P + + + +L LAR+I E L S+K++D D+FER F QLK YY D + PS EY I +++ +EFH N IK + +E+S EG+YN+++ ++ VP+E Y F+D+LA +++++IA CSEK++ LS Sbjct: 4 SSIEQNLNNFKKLVAGNSDKAQITPVLVQLKLAATIHLEKPTSLSNVSDKVKKDLVLAREILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLAKHKTSEFHSEIELIEFNNLDNSFIKFPLLVEKSITEGSYNKIIQSRSGVPSEYYQVFLDILADSIKEDIANCSEKSFKTLS 199
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: RPN12_SCHPO (26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces pombe GN=rpn12 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.054e-17 Identity = 56/177 (31.64%), Postives = 92/177 (51.98%), Query Frame = 1 Query: 100 RKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX--NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAY 624 RKD+N C + L +LKV L P + + + AR+++E+ VL+S++ D ++F R Q+ P+Y D+ L PS ++ +NRIAEFH +P ++ + LEQ+ MEGA+++V S ++ + YFM ++ VR+EIA C+EK Y Sbjct: 15 RKDWNACKKELLKLKVELAKQNLFVPTSDKE-----KASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDS---LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVY 183
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: PSMD8_CAEEL (26S proteasome non-ATPase regulatory subunit 8 OS=Caenorhabditis elegans GN=rpn-12 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.987e-13 Identity = 52/179 (29.05%), Postives = 90/179 (50.28%), Query Frame = 1 Query: 103 KDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLS 636 KD + L++L +L+ L D +A+ ++D+YE +VLL++ D + F+ Q+ YYT A + S N++++ NR+++FH N I V +EQS MEGAYN+V+ ++N+P+ Y F+ ++ T+R EIA EK++ L+ Sbjct: 17 KDLVAVEKALNELTKVLSASSDL----NDKQSALA----SKDLYEISVLLAILKHDFETFDDYINQMHTYYTMAPEN---SENKHLMTGLHLMFLLAANRLSDFHMLLEQIPQKEQTSNAYISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRIMLDTIRREIATSIEKSFKVLT 184
BLAST of DN618421 vs. ExPASy Swiss-Prot
Match: RPN12_YEAST (26S proteasome regulatory subunit RPN12 OS=Saccharomyces cerevisiae GN=RPN12 PE=1 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 2.870e-12 Identity = 54/204 (26.47%), Postives = 91/204 (44.61%), Query Frame = 1 Query: 46 PKLTEVSQQFDRFKAAMTRKDYNTCTQLLSQLKV-LLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFH---XXXXXXXXXXXXNPCIKHAVELEQSFMEGAYNR----VLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYL 633 P L E+++ A DY C +LL +K+ L+ +P L + +L + + I E L S++ + D+FE F QLKPYY +L S + + QN +FH + + + ++L++ MEG+Y + + S QN+ + F D+L +RDEIA +E +YD+L Sbjct: 2 PSLAELTKSLS---IAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNI--SEFDSFTDILKSAIRDEIAKNTELSYDFL 200 The following BLAST results are available for this feature:
BLAST of DN618421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN618421 ID=DN618421; Name=DN618421; organism=Citrus sinensis; type=EST; length=638bpback to top |