CX046781

Overview
NameCX046781
Unique NameCX046781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3806 contig Csv1_Contig3806:1..891. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RT12_HELAN (Ribosomal protein S12, mitochondrial OS=Helianthus annuus GN=RPS12 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.931e-53
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHS+VLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRR+GRSKYGAEKPKS
Sbjct:   24 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSIVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRKGRSKYGAEKPKS 124
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RT12_WHEAT (Ribosomal protein S12, mitochondrial OS=Triticum aestivum GN=RPS12 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.726e-52
Identity = 97/101 (96.04%), Postives = 101/101 (100.00%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHS+VL+RGGRVKDLPGVKFHCIRGVKDLLGIPDRR+GRSKYGAE+PKS
Sbjct:   24 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSIVLVRGGRVKDLPGVKFHCIRGVKDLLGIPDRRKGRSKYGAERPKS 124
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RT12_MAIZE (Ribosomal protein S12, mitochondrial OS=Zea mays GN=RPS12 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.726e-52
Identity = 97/101 (96.04%), Postives = 101/101 (100.00%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHS+VL+RGGRVKDLPGVKFHCIRGVKDLLGIPDRR+GRSKYGAE+PKS
Sbjct:   24 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSIVLVRGGRVKDLPGVKFHCIRGVKDLLGIPDRRKGRSKYGAERPKS 124
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RT12_ARATH (Ribosomal protein S12, mitochondrial OS=Arabidopsis thaliana GN=RPS12 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 2.492e-51
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI 308
            LD+CPQK GVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHS VLIRGGRVKDLPGVKFHCIRGVKDL+GIP RRRGRSKYGAEKPKSI
Sbjct:   24 LDKCPQKTGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSTVLIRGGRVKDLPGVKFHCIRGVKDLMGIPGRRRGRSKYGAEKPKSI 125
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RT12_BRANA (Ribosomal protein S12, mitochondrial OS=Brassica napus GN=RPS12 PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 7.250e-51
Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI 308
            LD+CPQK G CLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHS VLIRGGRVKDLPGVKFHCIRGVKDL+GIP RRRGRSKYGAEKPKSI
Sbjct:   24 LDKCPQKLGACLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSQVLIRGGRVKDLPGVKFHCIRGVKDLMGIPGRRRGRSKYGAEKPKSI 125
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RT12_OENEH (40S ribosomal protein S12, mitochondrial OS=Oenothera elata subsp. hookeri GN=RPS12 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.237e-50
Identity = 95/101 (94.06%), Postives = 99/101 (98.02%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            L +CPQKQGVCLRVSTRTPKKPNSAL KIAKVRLSNR+D+FAYIPGEGHNLQEHSMVL+RGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS
Sbjct:   87 LGKCPQKQGVCLRVSTRTPKKPNSALGKIAKVRLSNRNDVFAYIPGEGHNLQEHSMVLVRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 187
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RT12_NICSY (Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris GN=RPS12 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.237e-50
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI 308
            LDQCPQKQGVC RVSTRTPKKPNSA RKIAKVRLSNRHDIFA+IPGEGHN QEHSMVLIRGGRVKD PGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI
Sbjct:   24 LDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSMVLIRGGRVKDSPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI 125
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RT12_ALLCE (Ribosomal protein S12, mitochondrial OS=Allium cepa GN=RPS12 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.615e-50
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            LDQCPQKQGVCLRV T TPKKPNSALRKIAKVRL+NRHDIFAYIPGEGHN QEHS+VL+RGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS
Sbjct:   24 LDQCPQKQGVCLRVLTITPKKPNSALRKIAKVRLTNRHDIFAYIPGEGHNSQEHSIVLVRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 124
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RT12_PETPA (Ribosomal protein S12, mitochondrial OS=Petunia parodii GN=RPS12 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.109e-50
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI 308
            LDQCPQKQGVC RVSTRTPKKPNSA RKIAKVRLSNRHDIFA+IPGEGHNLQEHSMVLIRGGRVKD PGVK HCIRGVKDLLGIPDRRRGRSKYGAEKPKSI
Sbjct:   24 LDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI 125
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RT12_PETHY (Ribosomal protein S12, mitochondrial OS=Petunia hybrida GN=RPS12 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.109e-50
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI 308
            LDQCPQKQGVC RVSTRTPKKPNSA RKIAKVRLSNRHDIFA+IPGEGHNLQEHSMVLIRGGRVKD PGVK HCIRGVKDLLGIPDRRRGRSKYGAEKPKSI
Sbjct:   24 LDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI 125
The following BLAST results are available for this feature:
BLAST of CX046781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RT12_HELAN5.931e-5398.02Ribosomal protein S12, mitochondrial OS=Helianthus... [more]
RT12_WHEAT1.726e-5296.04Ribosomal protein S12, mitochondrial OS=Triticum a... [more]
RT12_MAIZE1.726e-5296.04Ribosomal protein S12, mitochondrial OS=Zea mays G... [more]
RT12_ARATH2.492e-5195.10Ribosomal protein S12, mitochondrial OS=Arabidopsi... [more]
RT12_BRANA7.250e-5194.12Ribosomal protein S12, mitochondrial OS=Brassica n... [more]
RT12_OENEH1.237e-5094.0640S ribosomal protein S12, mitochondrial OS=Oenoth... [more]
RT12_NICSY1.237e-5095.10Ribosomal protein S12, mitochondrial OS=Nicotiana ... [more]
RT12_ALLCE1.615e-5094.06Ribosomal protein S12, mitochondrial OS=Allium cep... [more]
RT12_PETPA2.109e-5095.10Ribosomal protein S12, mitochondrial OS=Petunia pa... [more]
RT12_PETHY2.109e-5095.10Ribosomal protein S12, mitochondrial OS=Petunia hy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B07-D13-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046781 ID=CX046781; Name=CX046781; organism=Citrus sinensis; type=EST; length=891bp
CTTTGGATCAATGTCCCCAGAAGCAAGGAGTATGCCTGCGTGTTTCGACG
AGAACACCGAAAAAACCTAATTCAGCTCTACGTAAGATAGCCAAAGTACG
GTTGAGCAATCGACATGATATATTTGCTTACATTCCGGGCGAAGGTCATA
ATTTGCAGGAACATTCTATGGTCTTAATAAGAGGAGGTAGAGTGAAAGAT
TTGCCAGGTGTGAAATTCCATTGTATTCGAGGAGTCAAGGATTTGCTGGG
AATTCCGGATCGAAGAAGAGGCAGATCAAAATATGGTGCAGAAAAACCAA
AATCGATATGAATGGAAGATGCCTCTTGAACTTGTTTTTTCGGTCAGTCG
AGGGCAACGTTACGCCCTAAAATAGAACTATACGGAGCCCTTCCGATTGT
TAGTCTTGCTACACTACACGAGTCTAGGGTGAAGTTGAAGCAGGAGATCG
ATCTCAAAACAAAGCCTGACCTAAACCCTTAGGACAAATTAGTTTGATGC
ACAGAACTTAACACTCAAGCTCCCTTATAAATTCTAGTTTTTAAAAAAAT
GAGTATGAAACCCCTATCCCTTACCTTGCCGGAACGGGAAAGGGCTCTCT
TGCTTTGCTTGTTTGCTTTGTTCCTTATAGCACTGTGTCAAGTTCTCCTT
TCATTGGTCTCGGGTGAAGTATCTGTTATAAGCGAATCTTTCCTTCCTTG
GCGGATGGTGGCATACTCCCTTCTGGCCTATCCAAGTGCAACTTTTCATT
CTAAAAAAAGAGAAAGGGCGATAGCTTTCACTTCTCTCATTCGGAGGGGC
TCCTCAAAGGCTCCCCTTAGAGTGGAAATTTCCCCGCCTGCAGAGTGTAA
GTATAGAGCTGGGGTCTCATTCCAGTGATTTTCATCTCCTT
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