CX046778

Overview
NameCX046778
Unique NameCX046778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11715 contig Csv1_Contig11715:347..1203. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046778 vs. ExPASy Swiss-Prot
Match: LTAA_AERJA (L-allo-threonine aldolase OS=Aeromonas jandaei GN=ltaA PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.520e-42
Identity = 96/210 (45.71%), Postives = 134/210 (63.81%), Query Frame = 3
Query:    6 TRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQISASDVHYTLSCF 635
            TRL+CLENTH    G+ L + Y   + E+  +HGL+LH+DGAR+FNA VA G  VR LV   DS S+CLSKGLGAPVGS++VGS  FI +ARRLRK +GGGMRQ            Q++V+ + D DH++A+ LAEGL  L G+R+D+  V+TN+V+ ++T     ++A LL  ++  G+L        +R+V H QI   D+   +  F
Sbjct:  132 TRLVCLENTH---NGKVLPLPYLREMRELVDEHGLQLHLDGARLFNAVVASGHTVRELVAPFDSVSICLSKGLGAPVGSLLVGSHAFIARARRLRKMVGGGMRQAGILAQAGLFALQQHVVRLAD-DHRRARQLAEGLAALPGIRLDLAQVQTNMVFLQLTSG---ESAPLLAFMKARGILF--SGYGELRLVTHLQIHDDDIEEVIDAF 332          
BLAST of CX046778 vs. ExPASy Swiss-Prot
Match: YF64_CAEEL (Uncharacterized protein R102.4 OS=Caenorhabditis elegans GN=R102.4 PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 5.418e-32
Identity = 77/215 (35.81%), Postives = 123/215 (57.21%), Query Frame = 3
Query:    6 TRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQL--KGLRVDVDAVETNIVYFEITE-DSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQISASDVHYTLSCFQK 641
            ++LIC+ENTH   GG+ L +E+  SV ++A++  LK+H+DGARI+NAAVA    V ++   AD+  +C SKGLGAPVGS++VG K+FI +AR  RK LGGG RQ             ++    +  DH++AK LA  +N    +  R  V A E +I    +    + +    L    ++H +L M   + R+R+V++  +S  ++   +  ++K
Sbjct:  195 SKLICIENTHNYTGGKALPIEWMRSVKQLAERRDLKVHMDGARIYNAAVASNCSVSKIASFADTVQMCFSKGLGAPVGSIVVGPKDFIDRARHSRKALGGGWRQSGILAAAAHIAL-DHADATIRADHERAKTLARMINDATPEEFRTKVFAAEKDITNMVLVHCQNGVTVQQLTDFFQKHDILAMTFDARRIRMVLNWNVSDENLETIVEVYKK 408          
BLAST of CX046778 vs. ExPASy Swiss-Prot
Match: LTAE_ECO57 (Low specificity L-threonine aldolase OS=Escherichia coli O157:H7 GN=ltaE PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.973e-30
Identity = 81/199 (40.70%), Postives = 115/199 (57.79%), Query Frame = 3
Query:    6 TRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQIS 602
            T+L+ LENTH    G+ L  EY     E  ++  L LH+DGARIFNA VA G  ++ L Q  DS ++CLSKGLG PVGS++VG++++IK+A R RK  GGGMRQ            + NV   L  DH  A  +AE   QL+    DV   +TN+++  + E+   +AA L + ++   VL+   +S  VR+V H  +S
Sbjct:  130 TKLLSLENTH---NGKVLPREYLKDAWEFTRERNLALHVDGARIFNAVVAYGSELKELTQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAIRWRKMTGGGMRQSGILAAAGMYALKNNV-ARLQEDHDNAAWMAE---QLREAGADVMRQDTNMLFVRVGEE---NAAALGEYMKARNVLI--NASPIVRLVTHLDVS 316          
BLAST of CX046778 vs. ExPASy Swiss-Prot
Match: LTAE_ECOLI (Low specificity L-threonine aldolase OS=Escherichia coli (strain K12) GN=ltaE PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.883e-30
Identity = 80/199 (40.20%), Postives = 115/199 (57.79%), Query Frame = 3
Query:    6 TRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQIS 602
            T+L+ LENTH    G+ L  EY     E  ++  L LH+DGARIFNA VA G  ++ + Q  DS ++CLSKGLG PVGS++VG++++IK+A R RK  GGGMRQ            + NV   L  DH  A  +AE   QL+    DV   +TN+++  + E+   +AA L + ++   VL+   +S  VR+V H  +S
Sbjct:  130 TKLLSLENTH---NGKVLPREYLKEAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAIRWRKMTGGGMRQSGILAAAGIYALKNNV-ARLQEDHDNAAWMAE---QLREAGADVMRQDTNMLFVRVGEE---NAAALGEYMKARNVLI--NASPIVRLVTHLDVS 316          
BLAST of CX046778 vs. ExPASy Swiss-Prot
Match: GLY1_SCHPO (Probable threonine aldolase OS=Schizosaccharomyces pombe GN=gly1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.005e-23
Identity = 75/203 (36.95%), Postives = 110/203 (54.19%), Query Frame = 3
Query:    6 TRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQISASDV 614
            T LICLENT     G  + ++    +  +AK H + LH DGAR+++AAVA  V ++      DS S+CLSKGL APVGS+IVG ++FI KA+  RK  GGG+RQ            Q N   +L   HK A  +AE    L G+ ++V   ++N+V       + ++ A L  + ++ G+++M       RIV H QI+   V
Sbjct:  159 TGLICLENT---IKGAVVPLDEVARISGLAKAHKIPLHCDGARLWDAAVASNVSIKEYCSYFDSVSLCLSKGLAAPVGSIIVGPRDFIAKAKWFRKAYGGGLRQSGMLAAAGLYSIQHN-FPLLKQVHKYAIEVAEYAESL-GIELEV-PTQSNMVTL-----ANINVAILCDEAKKSGIILMGP-----RIVFHIQITPDAV 345          
BLAST of CX046778 vs. ExPASy Swiss-Prot
Match: GLY1_YEAST (Low specificity L-threonine aldolase OS=Saccharomyces cerevisiae GN=GLY1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.747e-22
Identity = 73/199 (36.68%), Postives = 110/199 (55.28%), Query Frame = 3
Query:    6 TRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQIS 602
            TRLI LENT     G    +E    +     ++GLKLH DGARI+NAA   GVP+++  +  DS S+CLSK +GAP+GSV+VG+ +F+KKA   RK  GGG+RQ              +    L   H  A  LAE   + KG+ ++  A +TN V+  + + +++D   L+KK  ++ V +M       R+  H+Q++
Sbjct:  146 TRLISLENT---LHGIVYPLEELVRIKAWCMENGLKLHCDGARIWNAAAQSGVPLKQYGEIFDSISICLSKSMGAPIGSVLVGNLKFVKKATHFRKQQGGGIRQSGMMARIALVNINNDWKSQLLYSHSLAHELAE-YCEAKGIPLESPA-DTNFVFINL-KAARMDPDVLVKKGLKYNVKLMGG-----RVSFHYQVT 333          
BLAST of CX046778 vs. ExPASy Swiss-Prot
Match: GLY1_CANAL (Threonine aldolase OS=Candida albicans GN=GLY1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.282e-22
Identity = 69/209 (33.01%), Postives = 112/209 (53.59%), Query Frame = 3
Query:    6 TRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQISASDVHYTLSC 632
            T++I LENT     G  + +E    + E  +++ ++LH+DGAR++NA+VA G+ ++      DS S+CLSK LGAP+GSV+VG ++FI+KA   +K  GGG+RQ              N L  L+  H  AK + +   Q  G++++   V+T++V+ ++ + +K+D      +L E G           RI  H Q+S   V     C
Sbjct:  146 TKVISLENT---LHGIIIPIEEIRKISEFCRENDIRLHLDGARLWNASVATGISIKEYCSYFDSVSLCLSKSLGAPIGSVLVGDEKFIRKANHFKKQSGGGIRQAGIMSAMAIHAIDYN-LSKLELSHNYAKQIGD-FCQEHGIKLE-SPVDTSLVFLDL-KANKMDP----NRLVELGRTKYNVKLMGQRIACHFQLSQESVDNVKKC 343          
BLAST of CX046778 vs. ExPASy Swiss-Prot
Match: GLY1_ASHGO (Threonine aldolase OS=Ashbya gossypii GN=GLY1 PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.295e-21
Identity = 75/226 (33.19%), Postives = 118/226 (52.21%), Query Frame = 3
Query:    6 TRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQISASDV----HYTLSCFQKIYAGVCEENG 671
            T++I LENT     G    +E    +     ++ L+LH DGARI+NA+   GVP+++  +  DS S+CLSK +GAP+GS++VGS +FIKKA   RK  GGG+RQ            Q +    +   H+ A  LA    +  G+ ++  A +TN V+ ++ + SK++   L+KK  ++G  +M       R+  H+QIS   +       L  F+       +ENG
Sbjct:  147 TKVISLENT---LHGIIHPLEELVRIKAWCMENDLRLHCDGARIWNASAESGVPLKQYGELFDSISICLSKSMGAPMGSILVGSHKFIKKANHFRKQQGGGVRQSGMMCKMAMVAIQGDWKGKMRRSHRMAHELARFCAE-HGIPLESPA-DTNFVFLDL-QKSKMNPDVLVKKSLKYGCKLMGG-----RVSFHYQISEESLEKIKQAILEAFEYSKKNPYDENG 361          
BLAST of CX046778 vs. ExPASy Swiss-Prot
Match: TOXG_COCCA (Alanine racemase TOXG OS=Cochliobolus carbonum GN=TOXG PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.410e-18
Identity = 68/220 (30.91%), Postives = 110/220 (50.00%), Query Frame = 3
Query:    6 TRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXXQENVLVMLDGD-------HKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQISASDVHYTLSCFQKI 644
            T ++ +ENT    GG  + V     + + AK++ ++ H+DGAR+F A       ++      D  SV  SK LGAP+G++I+G K+ I++ RR RK +GGGMRQ             EN  +  + +       HK AK L E   + KG ++  + +ETNI++ ++ +   +  +  + K  E+GV++        RIV HHQI    V   +  F  I
Sbjct:  168 TSIVSMENT---AGGAVVPVHELRRIRDWAKQNNVRTHLDGARLFEAVATGAGTLKEYCSLIDLVSVDFSKNLGAPMGAMILGDKKLIQQMRRTRKGIGGGMRQGGVITAAAREALFENFGLGAEIESQTLLQVHKVAKRLGEEWTR-KGGKLSKE-IETNIIWLDL-DAVGIKKSQFIDKGREYGVIL-----DGCRIVCHHQIDIYAVEALIDVFHDI 376          
The following BLAST results are available for this feature:
BLAST of CX046778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
LTAA_AERJA1.520e-4245.71L-allo-threonine aldolase OS=Aeromonas jandaei GN=... [more]
YF64_CAEEL5.418e-3235.81Uncharacterized protein R102.4 OS=Caenorhabditis e... [more]
LTAE_ECO572.973e-3040.70Low specificity L-threonine aldolase OS=Escherichi... [more]
LTAE_ECOLI3.883e-3040.20Low specificity L-threonine aldolase OS=Escherichi... [more]
GLY1_SCHPO6.005e-2336.95Probable threonine aldolase OS=Schizosaccharomyces... [more]
GLY1_YEAST1.747e-2236.68Low specificity L-threonine aldolase OS=Saccharomy... [more]
GLY1_CANAL2.282e-2233.01Threonine aldolase OS=Candida albicans GN=GLY1 PE=... [more]
GLY1_ASHGO3.295e-2133.19Threonine aldolase OS=Ashbya gossypii GN=GLY1 PE=3... [more]
TOXG_COCCA3.410e-1830.91Alanine racemase TOXG OS=Cochliobolus carbonum GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_10B05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B05-D9-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046778 ID=CX046778; Name=CX046778; organism=Citrus sinensis; type=EST; length=857bp
CGACAACTCGACTTATCTGTTTGGAGAATACGCATGCAAACTGCGGTGGT
AGATGCCTTTCTGTAGAATACACGGACAGTGTTGGAGAGATTGCCAAGAA
GCATGGTTTAAAGCTTCACATTGATGGGGCTCGCATTTTCAATGCAGCAG
TTGCGCTTGGTGTTCCTGTTCGCAGGCTTGTACAGGCGGCTGATTCAGCT
TCGGTATGCCTGTCAAAAGGTCTTGGTGCTCCTGTTGGATCTGTTATTGT
TGGTTCCAAAGAATTTATAAAGAAGGCTCGAAGACTTAGGAAAACCTTAG
GTGGCGGTATGAGACAAGTTGGTGTCCTTTGTGCTGCCGCATTGGTTGCT
TTACAAGAGAATGTTCTTGTAATGCTTGATGGTGACCACAAGAAAGCAAA
ATTGTTGGCAGAAGGATTGAATCAACTAAAAGGATTAAGGGTGGATGTAG
ATGCAGTGGAGACCAACATTGTATATTTTGAAATTACAGAGGACTCGAAG
TTGGACGCGGCATGCCTACTCAAAAAATTGGAAGAGCATGGTGTACTTGT
TATGCCAGAGAGCTCTACAAGAGTTAGAATTGTGGTCCACCATCAAATTT
CAGCAAGCGATGTGCATTACACTTTGTCATGCTTTCAGAAAATTTATGCT
GGAGTATGTGAAGAAAATGGAAACTAGGAGGAGAAATTGCCATCCTATAC
TCCTTTGAAAAACATTTGCATATGCTGCAGGGAATTGTTACGAACCATCT
TGGCAGAATGGCAGTAACTGCTTCCTGTATAAAAACTTAAATCAATTTTT
AGTGTGCTTTAGTTAACTTTCTTAATTTATCCAAGTATCAGTTGCAAGTT
AAGTGAT
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