DN618415

Overview
NameDN618415
Unique NameDN618415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618415 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.875e-26
Identity = 52/71 (73.24%), Postives = 66/71 (92.96%), Query Frame = -3
Query:  384 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 596
            SAFFVFMEEFR+ + K+HP+NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++QAEG
Sbjct:   49 SAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119          
BLAST of DN618415 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.417e-23
Identity = 47/71 (66.20%), Postives = 62/71 (87.32%), Query Frame = -3
Query:  384 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 596
            SAFFVFME+FR+ YK+ HP NKSVA VGKAGG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN++QA G
Sbjct:   41 SAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG 111          
BLAST of DN618415 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 47/73 (64.38%), Postives = 61/73 (83.56%), Query Frame = -3
Query:  378 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 596
            SAFFVFMEEFR+++K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K +  YN+ ++   K
Sbjct:   46 SAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAK 118          
BLAST of DN618415 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.859e-21
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = -3
Query:  396 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 596
            SAFFVFM +FREQYKKDHP NKSVAAVGKA GE+WKS+SE +KAPYV +A K+K EYE  ++ YN++
Sbjct:   50 SAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116          
BLAST of DN618415 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.501e-20
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = -3
Query:  390 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 596
            SAFFVFM EFRE++K+ +PKNKSVAAVGKA GE+WKS+SE++KAPYVAKA K K EY K +  YN+ ++
Sbjct:   47 SAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGES 115          
The following BLAST results are available for this feature:
BLAST of DN618415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_SOYBN8.875e-2673.24HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI2.417e-2366.20HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
MNB1B_MAIZE1.015e-2164.38DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_VICFA3.859e-2170.15HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_WHEAT2.501e-2066.67HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02I15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002I15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618415 ID=DN618415; Name=DN618415; organism=Citrus sinensis; type=EST; length=598bp
CCCTTGTTTTTTTTCTCAAACGATGGGAACGCCTTAGCTAAATCATTAAG
CTTTAGAACACAGTACATATAGAGCAGTGAATCTCCCACCTACAGCTATT
AATTCTTCGAAAGGCAGGCATAAGAAAATGTCGAGGGAGAAGCAACATGA
TTCTCTTACATGATGATGAAGATGATGAAAGCATCCAAAAAAATTAACAT
GGAAGCACAAAGCATTAACATATGTTGTTTGAAACATTGTCACAGCCTAA
CATGACTATGCTAATTTCTTCCTTCAACTTCTATTCATCATCATCCTCCC
TCGCCACTGCCTTCTTCATCATCATCCTCATCATTCACCTCTGACATAGA
CTTCTCAGACTCCTCTTCTTCCTCCGGCTTAGTTCCCTCCGCCTGTCTCC
TATTGTAGTTTTTCATATCCTTCTCATACTCAACCTTGCGCTTCTCTGCC
TTAGCAACATACGGTGCTTTATCAGCTTCAGACATTGACTTCCATTTCTC
ACCACCAGCTTTACCAACAGCAGCAACTGATTTGTTCTTAGGATGATCCT
TCTTGTATTGTTCACGGAATTCTTCCATGAAAACAAAGAAGGCGCTGG
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