DN618412

Overview
NameDN618412
Unique NameDN618412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN618412 vs. ExPASy Swiss-Prot
Match: CCR4B_ARATH (Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana GN=CCR4-2 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.932e-42
Identity = 87/119 (73.11%), Postives = 94/119 (78.99%), Query Frame = -3 
Query:  232 KVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGV-GLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXLRKDTALPSPEWSSDHIALLAEF 585
            KV+P+HPDLAVDPL ILRPHTKLTHQLPLVSAYSSF R G+ GLG+E  RRR+D  TNEPLFT+CTRDFIGT DYIFYTA                LRKDTALPSPEWSS+HIALLAEF
Sbjct:  476 KVDPMHPDLAVDPLNILRPHTKLTHQLPLVSAYSSFVRKGIMGLGLEQHRRRIDLNTNEPLFTNCTRDFIGTHDYIFYTADTLMVESLLELLDEDGLRKDTALPSPEWSSNHIALLAEF 594
[Close]
BLAST of DN618412 vs. ExPASy Swiss-Prot
Match: CCR4A_ARATH (Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.900e-41
Identity = 83/118 (70.34%), Postives = 93/118 (78.81%), Query Frame = -3 
Query:  232 KVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXLRKDTALPSPEWSSDHIALLAEF 585
            KV+P+HPDL VDPL ILRPH+KLTHQLPLVSAYS FA++G  +  E QRRR+DP ++EPLFT+CTRDFIGTLDYIFYTA                LRKDTALPSPEWSSDHIALLAEF
Sbjct:  473 KVDPLHPDLMVDPLGILRPHSKLTHQLPLVSAYSQFAKMGGNVITEQQRRRLDPASSEPLFTNCTRDFIGTLDYIFYTADTLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEF 590
The following BLAST results are available for this feature:
BLAST of DN618412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CCR4B_ARATH2.932e-4273.11Carbon catabolite repressor protein 4 homolog 2 OS... [more]
CCR4A_ARATH1.900e-4170.34Carbon catabolite repressor protein 4 homolog 1 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02I13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002I13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618412 ID=DN618412; Name=DN618412; organism=Citrus sinensis; type=EST; length=587bp
TTTTTTTTTTTTTTTTTGAATAAAATTGATCATCTTTTTCTATGAGACAA
AAGGTGACATAATACAGAAGCAGATCAATGCTGGAATCCCATAAGGAGAT
AACCAGGAAAGAACACGGAGAGCATGATCTACCATTCTTACAATGACTTA
TCTATCAACGGCTTCTCTGGCCAATTTCCTCGGGCATGTTCGAACCCTGC
AGCATCAGCGTCTAGCTCTAGGCTTGCAGCGGAATTCAGCTAAAAGTGCT
ATATGATCAGAGGACCACTCTGGAGAAGGAAGGGCTGTGTCTTTCCTCAA
GCTATCCTCATCCAAGAGTTCCAACAAGGATTCAACGCTTAAAGAATCCG
CTGTGTAAAATATGTAATCTAGGGTACCAATAAAATCTCTTGTGCAATGT
GTAAATAACGGTTCATTGGTAGTAGGGTCCATTCTCCTCCTCTGATGCTC
CATGCCGAGACCAACTCCAATTCTTGCGAAGGATGAGTAAGCACTAACCA
ATGGAAGTTGATGTGTCAACTTAGTGTGAGGACGCAAGATCGTAAGAGGA
TCTACAGCCAAATCTGGATGCACTGGCTCTACCTTCC
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