DN618407

Overview
NameDN618407
Unique NameDN618407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618407 vs. ExPASy Swiss-Prot
Match: Y2168_ARATH (Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 9.460e-73
Identity = 132/196 (67.35%), Postives = 162/196 (82.65%), Query Frame = 2
Query:   98 RFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSS---LVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHM 676
            +F+THQ+FFS+VRSGDL  L+ ++DNLT DE  D SS    V+ELM++QND GETA+YISAA N +DIF  L++F  +E VKIRS+SDMN FHVAAK+GHLGI KEL+ +WPELC+ CD+SNTSPLY+AAVQDHL++VN +LD D SC  IVRKNGKT+LHTA RYGL+ IV ALI++D  IV +KDKKGQTALHM
Sbjct:    7 KFLTHQAFFSSVRSGDLSQLQQLVDNLTGDELIDESSPCSAVAELMSVQNDAGETAVYISAAENLEDIFRYLIRFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHM 202          
BLAST of DN618407 vs. ExPASy Swiss-Prot
Match: Y5262_ARATH (Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.445e-30
Identity = 78/184 (42.39%), Postives = 109/184 (59.24%), Query Frame = 2
Query:  125 SAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHM 676
            +AVR G  + L  +I         DG  L  EL+A QN +GETALY++A   + D+   L+K  D  +   ++++  + FH+AAK G+L +   L+   PEL  + DSS T+ L++AA Q H ++V  +LD  V    I R NGKTALH+AAR G   IV  LI++   +VT  DKKGQTALHM
Sbjct:   23 TAVREGKTDLLLEMIGE------HDGVEL-KELLAEQNQSGETALYVAAEYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHM 199          
BLAST of DN618407 vs. ExPASy Swiss-Prot
Match: Y3236_ARATH (Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.636e-24
Identity = 67/192 (34.90%), Postives = 105/192 (54.69%), Query Frame = 2
Query:  128 AVRSGDLETLKNIIDNLTKD-----EAPDGSSLVSELMAM----QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHM 676
            A + GDL  ++ I+ ++           +  + V+E+ A      N+ GETAL+ +A     D+   LLK+   E +  ++RS  +  H+AA +GH  I + L+     L ++   SN +PL SAA++ H +VVN +L    +   I R N K ALH AAR G + ++ AL+ +DP++    DKKGQTALHM
Sbjct:   81 AAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHM 272          
The following BLAST results are available for this feature:
BLAST of DN618407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y2168_ARATH9.460e-7367.35Ankyrin repeat-containing protein At2g01680 OS=Ara... [more]
Y5262_ARATH4.445e-3042.39Ankyrin repeat-containing protein At5g02620 OS=Ara... [more]
Y3236_ARATH1.636e-2434.90Ankyrin repeat-containing protein At3g12360 OS=Ara... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02I11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002I11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618407 ID=DN618407; Name=DN618407; organism=Citrus sinensis; type=EST; length=677bp
CAGAAAGTGTACTAAAGAAGAAGAAGATCATTTTTATTATGCTTGTAAAT
TGGATTTCAGTTCTTCAAGTCTTCTGATGGATTCATTAAAGTCATTCAGG
TTCATTACCCACCAATCTTTTTTCTCTGCCGTTCGATCTGGGGACCTGGA
AACCCTCAAGAATATTATTGATAATTTGACAAAGGATGAAGCTCCTGATG
GTTCTTCTTTGGTATCTGAGCTAATGGCTATGCAGAATGATACAGGGGAG
ACTGCCCTGTACATCTCTGCAGCTAATAATTTTCAGGATATTTTCAGTTG
CTTGCTTAAGTTTTGTGATGTTGAGATTGTCAAAATCAGGTCCCGGTCTG
ATATGAACACGTTTCATGTTGCTGCTAAGAAAGGCCACTTGGGGATCGCA
AAGGAGCTTGTGAGCATTTGGCCTGAGCTATGTAAGTCCTGTGACTCCTC
AAATACTAGCCCACTTTATTCGGCAGCTGTACAAGACCATTTGGATGTGG
TGAATACCATCTTGGATGCTGATGTCAGCTGCACGAGAATAGTTAGAAAA
AATGGAAAAACAGCTCTGCATACTGCTGCAAGGTATGGTCTCATTAATAT
AGTTACAGCTCTTATAGACCGGGATCCAGAAATTGTCACAATTAAAGATA
AGAAAGGTCAAACTGCACTCCATATGG
back to top