DN618404

Overview
NameDN618404
Unique NameDN618404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN618404 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.409e-32
Identity = 82/176 (46.59%), Postives = 101/176 (57.39%), Query Frame = 2 
Query:  119 MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLNRTGHARFRRGPVHXXXXXXXXXXXXXXXXGNSPHXXXXXXXXXXXXXXXXXXXXSYVQSQPHSLTLDFTKPSLFSGNVKSTE-LEXXXXXXXXXXXXXXXXXAITGDGS 643
            M V++M  PK  MEDQTAIQEAA+QG+KSMEHLIR++S+     +VDCS++TD TVSKFKKVISLLNR+GHARFRRGPVH                 +S                      S+VQ+   S+TLDFT+PS+F    KS+E +E                 AITGDGS
Sbjct:    1 MTVDIMRLPK--MEDQTAIQEAASQGLKSMEHLIRVLSNRPEERNVDCSEITDFTVSKFKKVISLLNRSGHARFRRGPVHSPP--------------SSSVPPPVKVTTPAPTQISAPAPVSFVQANQQSVTLDFTRPSVFGAKTKSSEVVEFAKESFSVSSNSSFMSSAITGDGS 160
[Close]
BLAST of DN618404 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.409e-32
Identity = 82/176 (46.59%), Postives = 97/176 (55.11%), Query Frame = 2 
Query:  119 MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNH-VDCSDLTDLTVSKFKKVISLLNRTGHARFRRGPVHXXXXXXXXXXXXXXXXGNSPHXXXXXXXXXXXXXXXXXXXXSYVQSQPHSLTLDFTKPSLFSGNVKSTELEXXXXXXXXXXXXXXXXXAITGDGS 643
            MAV+LM FPK  ++DQTAIQEAA+QG++SMEHLIR++S+     H VDCS++TD TVSKFK VISLLNRTGHARFRRGPVH                   P                       +   P S+TLDF+KPS+F    KS ELE                 AITGDGS
Sbjct:    1 MAVDLMRFPK--IDDQTAIQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEITDFTVSKFKTVISLLNRTGHARFRRGPVHSTSSAASQKLQSQIVKNTQPE----------APIVRTTTNHPQIVPPPSSVTLDFSKPSIFGTKAKSAELEFSKENFSVSLNSSFMSSAITGDGS 164
The following BLAST results are available for this feature:
BLAST of DN618404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WRK17_ARATH7.409e-3246.59Probable WRKY transcription factor 17 OS=Arabidops... [more]
WRK11_ARATH7.409e-3246.59Probable WRKY transcription factor 11 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02I09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618404 ID=DN618404; Name=DN618404; organism=Citrus sinensis; type=EST; length=645bp
CACCCTCGCAGCCTCAGCCTTAAGTTTTACTTTTTCAAAGGGTTTCGTCG
AATGACATCTTGAGGCTTTTCCAAATTGCTCTCCTTTGGTAGCAGAAACT
TTTTCGTTTTTCTAAATCATGGCGGTGGAGCTGATGGGATTTCCAAAAAG
GATGATGGAAGATCAGACGGCGATACAAGAAGCTGCAACGCAAGGGATCA
AAAGCATGGAGCACCTGATCCGTCTCATGTCTCATCACCAATCCTCGAAT
CACGTTGACTGCTCGGACCTCACCGATCTCACCGTCTCTAAGTTCAAAAA
AGTCATTTCCCTGCTCAACCGAACCGGTCACGCCCGGTTCAGGCGCGGGC
CGGTTCACTCTTCGCCTTCATCTTCATCTGCATCTGCGCCAGCCGCCGCC
GCCTCAGGCAACTCTCCGCACACACAGACCTTAACTCTTACTCCGCCTGC
TCCTACGATGGCTGTCGCTCCCTCTACGGCGAGTTACGTCCAGTCACAGC
CGCACAGTCTGACTCTTGATTTTACAAAACCTAGTTTGTTTAGCGGAAAC
GTCAAGAGCACTGAGCTCGAGTTTTCCAAAGACAGCTTCTGTGTGTCGTC
GAACTCGTCCTTCATGTCCTCTGCTATCACCGGAGACGGCAGCGT
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