DN618400

Overview
NameDN618400
Unique NameDN618400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.654e-28
Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  285 VQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 557
            VQ+TLSTHSPDEEYL ++ ++  HW  D +V+  F+KFS  L +IEK IN RNKD +LK R GAG+PPYELLLP+S  GVTGRGIPNSISI
Sbjct:  827 VQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIPNSISI 917          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.038e-22
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = -2
Query:  285 VQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 557
            V DTLSTHSPDEEY+G+  Q  S W  D E+++ F  FSA +  IEK I+ RN+D   + RCGAG+ PYEL+ PSS PGVT RG+PNS+SI
Sbjct:  837 VVDTLSTHSPDEEYIGE-RQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVPNSVSI 926          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.946e-22
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  285 VQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 557
            V DTLSTHSPDEEY+G+  Q  S W  D E++  F  F+A +  IEK I  RN D   + RCGAG+ PYELL+PSS PGVT RG+PNS+SI
Sbjct:  830 VVDTLSTHSPDEEYIGE-RQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVPSSEPGVTCRGVPNSVSI 919          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21
Identity = 52/89 (58.43%), Postives = 62/89 (69.66%), Query Frame = -2
Query:  285 DTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 551
            D LS+HSPDEEY+G+  +    W+ +P V   F+KFS  L+E E  I+ RN +   K RCGAGI PYELL P S PGVTGRGIPNSISI
Sbjct:  810 DILSSHSPDEEYMGEYAE--PAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEPGVTGRGIPNSISI 896          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.075e-19
Identity = 51/91 (56.04%), Postives = 62/91 (68.13%), Query Frame = -2
Query:  285 VQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 557
            V D LS+HS DEEYLG   +    W +D  V   +D F+A L+EIE +I+ RNKD +LK RCGAGI PY+L+ P S  GVTG GIPNS SI
Sbjct:  836 VLDVLSSHSTDEEYLG--GEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDSGVTGMGIPNSTSI 924          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.126e-19
Identity = 51/91 (56.04%), Postives = 61/91 (67.03%), Query Frame = -2
Query:  285 VQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 557
            V D LSTHS DEEYLG   +    W +D  V   +  F+A L+EIE +I+ RNKD +LK RCGAGI PY+L+ P S  GVTG GIPNS SI
Sbjct:  853 VLDVLSTHSTDEEYLG--GEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTGMGIPNSTSI 941          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.333e-19
Identity = 50/92 (54.35%), Postives = 58/92 (63.04%), Query Frame = -2
Query:  285 VQDTLSTHSPDEEYLGQVNQLHS-HWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 557
            V DTLSTHSPDEEYLG+        W  D   +     F+A++   E+ I  RN D   K RCGAG+ PYELL PSS PGVT RG+PNSISI
Sbjct:  827 VVDTLSTHSPDEEYLGEGRDEGGVPWTADEAAVAAHGMFAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSSPPGVTCRGVPNSISI 918          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.333e-19
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = -2
Query:  285 VQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 557
            V DTLSTHS DEEYLG+  +    W  DP  L    +F+A++   E+ I  RN D   + RCGAG+ PYEL+ PSSGPG+T RG+PNS++I
Sbjct:  811 VIDTLSTHSADEEYLGE--RPDEAWTADPAALAAAREFAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 899          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.026e-18
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = -2
Query:  285 DTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 551
            D LSTHSPDEEY+G+  Q  + W N+P +   F++F   L+ +E +I+ RN +  LK R GAG+  YELL P+S  GVTG G+P SISI
Sbjct:  810 DLLSTHSPDEEYIGE--QQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEHGVTGMGVPYSISI 896          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.822e-17
Identity = 48/89 (53.93%), Postives = 56/89 (62.92%), Query Frame = -2
Query:  285 DTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 551
            + LSTHS DE YLGQ +     W  + E L  F+KF   ++EIEK I+ RN D  LK R G    PY LL PSS  GVTGRGIPNS+SI
Sbjct:  773 EILSTHSSDEVYLGQRDS--KEWAAEKEALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEGGVTGRGIPNSVSI 859          
The following BLAST results are available for this feature:
BLAST of DN618400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
LOX6_ARATH1.654e-2865.93Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX4_ARATH1.038e-2258.24Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH3.946e-2258.24Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU4.363e-2158.43Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC1_ORYSJ1.075e-1956.04Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOXC2_ORYSJ3.126e-1956.04Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX6_ORYSJ5.333e-1954.35Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX5_ORYSJ5.333e-1951.65Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX2_ARATH2.026e-1850.56Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX1_ARATH3.822e-1753.93Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02I07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618400 ID=DN618400; Name=DN618400; organism=Citrus sinensis; type=EST; length=558bp
TTTTTTTTTTTTTTTTTCAGAAAACGATATGTTCAATATAAGTTGCAGCA
TCTTATATGTTGCTTTACAAAGATCAGATCAGATCCAATATCATGATATT
CCAAGTTTTCTGTGTCCTATCATATCTTTTACCCACAAATTACAGAGCTT
TAATATCAAATACCGAACCCCAAAAGATCTATTGAAGGTCCATACAACCG
CACAGCACAGAAATAAAATGGTATGCACTAACCGATAGTGACAAAAAGGC
ATCTACCAGTGTCTCAATTTAGCTAAGTCCATCAGATAGAAATACTATTG
GGGATTCCTCGACCAGTTACTCCCGGACCAGAGGAAGGAAGAAGCAGTTC
ATATGGTGGAATGCCAGCACCACATCTGCCTTTAAGACGGAAATCTTTAT
TTCTTGTATTTATTATCTTTTCAATCTCCTCCAGATTAGCAGAGAACTTA
TCAAACATATTCAAAACTTCAGGGTCATTGATCCAGTGGCTGTGTAACTG
GTTCACCTGACCTAGATACTCTTCATCAGGAGAGTGAGTGGACAGAGTGT
CTTGGACA
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