DN618399

Overview
NameDN618399
Unique NameDN618399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618399 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 69/174 (39.66%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  175 IRAVVNSDQNKAT-EAATKSVDAKDVNGXXXXXXXXXKEGLVDVRAVXXXXXXXXXXXXXXXXDQWELFVNGIGQGIMIQLISEDIDPVTNSG-KSVESAVRGWLPKPVTSSNVNIFQYEANFGVPSDFGNPGAILITNLHGKEFYLLEIVVHGFDGRPVFFPANTWIHSRKDN 690
            +RAV++ ++     E   KS +   +N            G   V AV                 Q ELF+  IGQG++IQL+SE+IDP T  G KS+ES V G LPK V      +F   A+F VP +FG PGAIL+TNL   E  L EI++       + FPANTWIHS+ DN
Sbjct:   39 VRAVISREEKAVDQEDGKKSTNKPLINSSQFPWQRSKYTGSKTVTAVVKIRKKIKEKLTERFEHQLELFMKAIGQGMLIQLVSEEIDPETGKGRKSLESPVMG-LPKAVKDPRYLVF--TADFTVPINFGKPGAILVTNLLSTEICLSEIIIED-STDTILFPANTWIHSKNDN 208          
BLAST of DN618399 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 59/175 (33.71%), Postives = 86/175 (49.14%), Query Frame = 1
Query:  172 PIRAVVNSDQNKA-TEAATKSVDAKDVNGXXXXXXXXXKEGLVDVRAVXXXXXXXXXXXXXXXXDQWELFVNGIGQGIMIQLISEDIDPVTNSGKSVESAV-RGWLPKPVTSSNVNIFQYEANFGVPSDFGNPGAILITNLHGKEFYLLEIVVHGFDGRPVFFPANTWIHSRKDN 690
            P+RAV +S    A +E   K++    V           K     VRAV                   + F + IG+ ++++L+S  +DP TN  K  ++AV + W  K  ++S      Y A F V S FG+PGAI +TN H KEF+L  I + GF   PV FP N+W+ S+KD+
Sbjct:   48 PMRAVNSSGVVAAISEDLVKTLRISTVGRKQEKEEEEEKSVKFKVRAVATVRNKNKEDFKETLVKHLDAFTDKIGRNVVLELMSTQVDPKTNEPKKSKAAVLKDWSKK--SNSKAERVHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDH 220          
BLAST of DN618399 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 1
Query:  370 ELFVNGIGQGIMIQLISEDIDPVTNSGKSVESAV-RGWLPKPVTSSNVNIFQYEANFGVPSDFGNPGAILITNLHGKEFYLLEIVVHGFDGRPVFFPANTWIHSRKDN 690
            + F + IG+ I+++LIS  +DP T   K   +AV + W  K  T +      Y A F V + FG+PGAI + N H KEF+L  I + GF   PV FP N+W+ S+KD+
Sbjct:  109 DAFADKIGRNIVLELISTQLDPKTKLPKKSNAAVLKDWSKKSKTKAER--VHYTAEFTVDAAFGSPGAITVMNKHQKEFFLESITIEGFALGPVHFPCNSWVQSQKDH 214          
BLAST of DN618399 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 36/105 (34.29%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  361 DQWELFVNGIGQGIMIQLISEDIDPVTNSGK-SVESAVRGWLPKPVTSSNVNIFQYEANFGVPSDFGNPGAILITNLHGKEFYLLEIVVHGFDGRPVFFPANTWI 672
            +Q +   + +G+ ++++L+S + DP   + K S  SA+ GW  K    +   +  Y A F V + FG PGA+ + N H +EFY+  IVV GF   P  F  N+W+
Sbjct:   88 EQLDALADRVGRSVLLELVSTETDPRKGTPKKSKPSALVGWFDKKDVKAERVV--YTAEFAVDAGFGEPGAVTVLNRHQREFYIESIVVEGFPTGPAHFTCNSWV 190          
The following BLAST results are available for this feature:
BLAST of DN618399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LOX6_ARATH8.007e-2239.66Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX4_ARATH4.112e-1833.71Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH1.463e-1540.74Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ1.977e-1234.29Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02I07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618399 ID=DN618399; Name=DN618399; organism=Citrus sinensis; type=EST; length=695bp
CCCCCCCTTAAAAAGGACTTGGGAAGAAAATTGTATGCAGTGAATCCAAT
GTCTTCAGCTCTAAAAACACAGCTCTTGACCGGCCCTGCCCTCCGGCGGG
TTCCGGCTATACCCGGCGCTGTGAGTAATGGGAATCTCCGGCCGGCCCGA
GTGACCAAGTCCAAGTTCTGCCCGATTCGGGCTGTTGTAAACAGTGATCA
AAACAAAGCTACAGAGGCTGCTACGAAGTCGGTGGACGCAAAAGACGTTA
ACGGGTCGTTATTGGTTAGTAGCTCGAGTTCAAAGGAAGGGTTAGTTGAT
GTGAGAGCAGTGATCACGATAAGGAAGAAGTTGAAAGAAAAGCTCACTGA
AAAGATTGAGGATCAATGGGAGCTTTTTGTAAATGGGATTGGACAAGGAA
TCATGATTCAGCTTATAAGTGAAGACATTGATCCTGTTACCAACTCAGGG
AAGAGTGTAGAATCTGCAGTTAGGGGCTGGTTGCCGAAGCCGGTAACTTC
AAGCAATGTCAACATTTTTCAATATGAGGCTAATTTCGGTGTCCCATCTG
ATTTTGGTAACCCAGGGGCTATTCTCATTACTAATCTTCACGGCAAGGAG
TTTTACTTGTTGGAGATTGTCGTTCATGGTTTTGATGGACGCCCTGTCTT
CTTCCCAGCCAATACATGGATCCATTCACGGAAAGATAATGCTGA
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