DN618393

Overview
NameDN618393
Unique NameDN618393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618393 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 3.131e-78
Identity = 135/164 (82.32%), Postives = 149/164 (90.85%), Query Frame = 1
Query:   76 MTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGMGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 567
            ++P  I ++ V +PELVV EV++ INASRRNLG LSCG GNPIDDCWRCDP WEKNRQRLADCAIGFGK+A+GGRDG+IYVVTD  D DVVNPKPGTLR+AVIQDEPLWIIFARDM I+LKEELIMNSFKTIDGRGASVHIAGG CIT+QYVTNIIIHG+NIHD
Sbjct:   20 LSPTFIASTPVSEPELVVQEVNEKINASRRNLGVLSCGTGNPIDDCWRCDPKWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDSSDKDVVNPKPGTLRHAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNIHD 183          
BLAST of DN618393 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 2.931e-76
Identity = 135/163 (82.82%), Postives = 149/163 (91.41%), Query Frame = 1
Query:   88 LILASAVPDPELVVHEVHKSINAS---RRNLGYLSCGMGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 567
            L L+S VPDPE VV EVHKSINAS   RR LGYLSC  GNPIDDCWRCDP+WE++RQRLADCAIGFGKNA+GGRDGRIYVVTD G+ + V+PKPGTLR+AV+QDEPLWIIF RDMTI+LKEELIMNSFKTIDGRGASVHI+GGPCITIQYVTNIIIHG++IHD
Sbjct:   21 LFLSSPVPDPESVVEEVHKSINASVAGRRKLGYLSCTTGNPIDDCWRCDPHWEQHRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDNPVSPKPGTLRHAVVQDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGIHIHD 183          
BLAST of DN618393 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 5.527e-75
Identity = 133/162 (82.10%), Postives = 146/162 (90.12%), Query Frame = 1
Query:   94 LASAVP--DPELVVHEVHKSINAS--RRNLGYLSCGMGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 567
            LAS++P  DPELVV EVH+ IN S  RR LG+ SCG GNPIDDCWRCD +WEKNR+RLADC IGFGKNA+GGRDG IYVVTDPG+ D VNP+PGTLRYAVIQDEPLWIIF RDMTI+LKEELIMNSFKT+DGRGASVHI+GGPCITIQYVTNIIIHGL+IHD
Sbjct:   44 LASSLPVSDPELVVEEVHRKINESISRRKLGFFSCGSGNPIDDCWRCDKDWEKNRKRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDPVNPRPGTLRYAVIQDEPLWIIFKRDMTIQLKEELIMNSFKTLDGRGASVHISGGPCITIQYVTNIIIHGLHIHD 205          
BLAST of DN618393 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.152e-72
Identity = 126/163 (77.30%), Postives = 142/163 (87.12%), Query Frame = 1
Query:   85 ALILASAVPD--PELVVHEVHKSINASRRNLGYLSCGMGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 567
            +L +AS+ P   P  +V+EVHKSINASRRNLGYLSCG GNPIDDCWRCDPNW  NRQRLADCAIGFGKNA+GGR+GRIYVVTDPG+ D VNP PGTLRYAVIQDEPLWIIF RDM I+L++EL+MNS KTIDGRG +VHI  GPCITI Y +NIIIHG++IHD
Sbjct:   14 SLAIASSSPSRTPHAIVNEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWANNRQRLADCAIGFGKNAMGGRNGRIYVVTDPGNDDPVNPVPGTLRYAVIQDEPLWIIFKRDMVIQLRQELVMNSHKTIDGRGVNVHIGNGPCITIHYASNIIIHGIHIHD 176          
BLAST of DN618393 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.364e-65
Identity = 113/158 (71.52%), Postives = 131/158 (82.91%), Query Frame = 1
Query:  112 DPELVVHEVHKSINAS------RRNLGYLSCGMGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 567
            DP++V  EV K +  S      RR LG+ SCG GNPIDDCWRCD NW KNR+RLADC IGFG+NA+GGRDGR Y+VTDP D DVVNPKPGTLR+AVIQ+EPLWI+F RDM I LK+ELIMNSFKTID RG++VHIA G CITIQ++TN+IIHGL+IHD
Sbjct:   88 DPDMVADEVAKLVQMSEQNRTARRKLGFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYIVTDPTDEDVVNPKPGTLRHAVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGLHIHD 245          
BLAST of DN618393 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 8.844e-65
Identity = 112/139 (80.58%), Postives = 122/139 (87.77%), Query Frame = 1
Query:  151 NASRRNLGYLSCGMGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 567
            NASRR+L YLSC  GNPIDDCWRCDPNWE NRQRLADCAIGFGKNA+GGR GRIYVVTDP + D VNP+PGTLRYAV Q+EPLWIIF RDM IRLK+ELI+ SFKTIDGRG+SVHI  GPC+ I Y TNIIIHG+NIHD
Sbjct:   46 NASRRSLAYLSCRTGNPIDDCWRCDPNWETNRQRLADCAIGFGKNAIGGRKGRIYVVTDPANDDPVNPRPGTLRYAVTQEEPLWIIFKRDMVIRLKKELIITSFKTIDGRGSSVHITDGPCLKIHYATNIIIHGINIHD 184          
BLAST of DN618393 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 1.970e-64
Identity = 110/154 (71.43%), Postives = 129/154 (83.77%), Query Frame = 1
Query:  106 VPDPELVVHEVHKSINASRRNLGYLSCGMGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 567
            V D  L + E+    +  RR LGY +CG GNPIDDCWRCDPNW KNR+RLADC IGFG+NA+GGRDGR YVVTDP D + VNP+PGTLR+AVIQD PLWI+F RDM I+LK+ELI+NSFKTIDGRGA+VHIA G CITIQ+VTN+I+HGL+IHD
Sbjct:   51 VADEVLALTEMSVRNHTERRKLGYFTCGTGNPIDDCWRCDPNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDNPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIVHGLHIHD 204          
BLAST of DN618393 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 4.389e-64
Identity = 115/158 (72.78%), Postives = 128/158 (81.01%), Query Frame = 1
Query:  103 AVPDPELVVHEVHKSINAS--RRNLGYLS-CGMGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 567
            AV DPE +   V  SI  S  RR LG+ S C  GNPIDDCWRCD  W + R+RLADCAIGFG+NAVGGRDGR Y+VTDP D+D V PKPGTLRYAVIQDEPLWI+F RDM I L +ELIMNSFKTIDGRG +VHIAGG C+T+QYVTNIIIHG+NIHD
Sbjct:   36 AVKDPEEIAAMVDMSIRNSTYRRKLGFFSSCSTGNPIDDCWRCDKKWHRRRKRLADCAIGFGRNAVGGRDGRYYIVTDPSDHDPVTPKPGTLRYAVIQDEPLWIVFKRDMVITLSQELIMNSFKTIDGRGVNVHIAGGACLTVQYVTNIIIHGINIHD 193          
BLAST of DN618393 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.716e-63
Identity = 113/157 (71.97%), Postives = 128/157 (81.53%), Query Frame = 1
Query:  103 AVPDPELVVHEVHKSINAS--RRNLGYLSCGMGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 567
            AV +P+ V   V  SI  S  RR LGY SC  GNPIDDCWRCD  W+  R+RLADC+IGFG+NA+GGRDGR YVVTDPGD D VNP PGTLR+AVIQDEPLWIIF RDM I LK+ELIMNSFKTIDGRG +VHIA G C+TIQYVTNII+HG+++HD
Sbjct:   35 AVENPDEVAAMVDMSIRNSTERRRLGYFSCATGNPIDDCWRCDRKWQLRRKRLADCSIGFGRNAIGGRDGRFYVVTDPGDDDPVNPIPGTLRHAVIQDEPLWIIFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACLTIQYVTNIIVHGIHVHD 191          
BLAST of DN618393 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 1.844e-62
Identity = 112/157 (71.34%), Postives = 126/157 (80.25%), Query Frame = 1
Query:  103 AVPDPELVVHEVHKSINAS--RRNLGYLSCGMGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHD 567
            AV +PE V   V   I  S  RR LG+ SC  GNPIDDCWRCD NW   R+RLA+CAIGFG+NA+GGRDGR YVVTDP D+D VNP+PGTLR+AVIQD PLWI+F RDM I L +ELIMNSFKTIDGRG +V IAGG CITIQYVTNIIIHG+N+HD
Sbjct:   59 AVKNPEEVAAMVDMKIKNSTERRRLGFFSCATGNPIDDCWRCDRNWHLRRKRLANCAIGFGRNAIGGRDGRYYVVTDPSDHDAVNPRPGTLRHAVIQDRPLWIVFKRDMVITLTQELIMNSFKTIDGRGVNVAIAGGACITIQYVTNIIIHGINVHD 215          
The following BLAST results are available for this feature:
BLAST of DN618393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL5_ARATH3.131e-7882.32Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]
PEL18_ARATH2.931e-7682.82Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL22_ARATH5.527e-7582.10Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]
PEL_ZINEL1.152e-7277.30Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]
PEL15_ARATH1.364e-6571.52Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL11_ARATH8.844e-6580.58Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
PEL1_ARATH1.970e-6471.43Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL14_ARATH4.389e-6472.78Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL8_ARATH3.716e-6371.97Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL10_ARATH1.844e-6271.34Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02I03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618393 ID=DN618393; Name=DN618393; organism=Citrus sinensis; type=EST; length=569bp
AGGAAATTAAACCGGAAAATTAGAAAAAAAATGGCAATCCCTTCTCCTTC
TCTTAGCATCTTCCTCCTCTTTCTCATGACCCCAGCTCTCATTTTAGCTT
CCGCAGTTCCGGACCCAGAATTAGTCGTACACGAAGTACACAAGAGCATC
AATGCGTCTAGGAGGAACCTGGGTTACTTGTCTTGCGGAATGGGCAATCC
GATTGACGATTGCTGGCGGTGCGACCCCAACTGGGAGAAGAACAGGCAAA
GGTTGGCGGATTGTGCGATTGGGTTCGGCAAGAATGCGGTTGGTGGACGT
GATGGTAGAATTTATGTGGTCACTGACCCCGGTGACTATGACGTCGTAAA
CCCTAAACCCGGAACTCTAAGGTACGCTGTGATCCAAGATGAGCCGTTAT
GGATCATTTTCGCTCGTGATATGACCATCAGATTGAAGGAAGAGTTGATC
ATGAACTCTTTCAAGACCATCGACGGTCGGGGAGCCAGTGTGCACATAGC
TGGTGGTCCATGCATTACCATACAGTACGTGACCAACATTATTATCCATG
GGTTAAACATACACGACTG
back to top