DN618391

Overview
NameDN618391
Unique NameDN618391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618391 vs. ExPASy Swiss-Prot
Match: ACOX4_ARATH (Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.244e-66
Identity = 120/160 (75.00%), Postives = 136/160 (85.00%), Query Frame = 2
Query:  140 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL 619
            M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQA+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AIA AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYL
Sbjct:    1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYL 160          
BLAST of DN618391 vs. ExPASy Swiss-Prot
Match: GCDH_CAEEL (Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 38/114 (33.33%), Postives = 66/114 (57.89%), Query Frame = 2
Query:  278 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL 619
            D +Q  D LT +E+++ +  RE  ++ + P + E +   +F   +IP++G++ + G   +GYGC G S  G  +   E+ RVD+   + + V +SL +  I   GSE+QKQKY+
Sbjct:   24 DAFQLSDQLTEDERSLMLSAREYCQERLLPRVTEAYRTEKFDPSLIPEMGSMGLLGAPYQGYGCAGTSTVGYGLIAREVERVDSGYRSTMSVQTSLVIGPIYNYGSEDQKQKYI 137          
BLAST of DN618391 vs. ExPASy Swiss-Prot
Match: ACDS_CLOAB (Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum GN=bcd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.748e-11
Identity = 42/107 (39.25%), Postives = 56/107 (52.34%), Query Frame = 2
Query:  302 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL 619
            LT E++ VR  VRE  E E+ PI AE  E   FP   + K+G   + G    K YG  G  V    IA+ E+++V  +    +  H+SL    I   G+EEQKQKYL
Sbjct:    5 LTREQELVRQMVREFAENEVKPIAAEIDETERFPMENVKKMGQYGMMGIPFSKEYGGAGGDVLSYIIAVEELSKVCGTTGVILSAHTSLCASLINEHGTEEQKQKYL 111          
BLAST of DN618391 vs. ExPASy Swiss-Prot
Match: GCDH_HUMAN (Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=GCDH PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 40/109 (36.70%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  293 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL 619
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYL
Sbjct:   57 EEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYL 165          
BLAST of DN618391 vs. ExPASy Swiss-Prot
Match: ACDB_BACSU (Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmgC PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  302 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL 619
            +T E+  +R  VR+   KEIAP  AE  EK  EFPF +I K+G   + G  + + YG  G  V    +AI EI+R+ A+    + VH+S+    I   G+EEQK KY+
Sbjct:    3 VTQEQVMMRKMVRDFARKEIAPA-AEIMEKTDEFPFQLIKKMGKHGLMGIPVPEQYGGAGADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYFGNEEQKMKYI 109          
The following BLAST results are available for this feature:
BLAST of DN618391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ACOX4_ARATH3.244e-6675.00Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidop... [more]
GCDH_CAEEL3.764e-1433.33Probable glutaryl-CoA dehydrogenase, mitochondrial... [more]
ACDS_CLOAB1.748e-1139.25Acyl-CoA dehydrogenase, short-chain specific OS=Cl... [more]
GCDH_HUMAN6.644e-1136.70Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo ... [more]
ACDB_BACSU6.644e-1139.81Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmg... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02I02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618391 ID=DN618391; Name=DN618391; organism=Citrus sinensis; type=EST; length=619bp
CCCCCCTACGGATCCCGATACTCTCATCTCATCTCCTTCAGTTTCTTATT
TTCACTTTTTTTTTCAACGCTTAAGACTTCGCTTTAACGCGCTCTGAGTT
TCCTCCGTCACATCACACACACTGTTATCCGTAATCACCATGACTATTCA
CTCATCCAAACATCAAGATGATGTTGACAAAAATGCCAGGAGTTCGTATT
TTAATTTACCAGCATTGGATATTTCAGTCGCATTCCCTCAAGCAACACCG
GCGTCTAAGTTTCCTCCTTGTGCGTCAGACTACTATCAATTTGATGATCT
CTTGACTTCGGAGGAGCAGGCTGTTCGGATGAAAGTGAGAGAGTGTATGG
AGAAAGAAATAGCCCCTATAATGGCGGAGTATTGGGAGAAAGCAGAATTT
CCCTTTCATGTTATTCCAAAGCTTGGTGCCCTACGCGTAGCTGGTGGCAC
AATAAAGGGTTATGGCTGTCCTGGTCACTCTGTTACTGGAGCTGCTATTG
CTATAGCAGAAATTGCTCGAGTTGATGCTAGTTGTTCTACTTTTATATTG
GTGCATTCCTCTCTGGCGATGCTGACTATTGCATTGTGCGGGTCAGAGGA
ACAGAAGCAAAAATATCTG
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