DN618390

Overview
NameDN618390
Unique NameDN618390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618390 vs. ExPASy Swiss-Prot
Match: HS185_ARATH (18.5 kDa class IV heat shock protein OS=Arabidopsis thaliana GN=HSP18.5 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.174e-24
Identity = 63/113 (55.75%), Postives = 72/113 (63.72%), Query Frame = -3
Query:  197 IFP-----TRQTHINWSETTRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTDDGKFMSRFKLPDNAITDQVKASMNYGLLSVTVSKEMSLQP---------QNVRVVEITGSD 493
            IFP     T  T +NW+ET  AHVFKAY PG+  D+VI FVDE+  LQI T D KFMSRFKLP+NA+TDQV A M    L V V K+ S  P         +NVRVVEITG D
Sbjct:   49 IFPQTSSSTVNTQLNWTETPTAHVFKAYLPGVDQDEVIAFVDEEGYLQICTGDNKFMSRFKLPNNALTDQVTAWMEDEFLVVFVEKDASSSPPQLPEIEENRNVRVVEITGDD 161          
BLAST of DN618390 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.889e-18
Identity = 53/109 (48.62%), Postives = 68/109 (62.39%), Query Frame = -3
Query:  203 THINWSETTRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLSVTVSKEMSLQPQNVRVVEITG 475
            T I+W ET  AHVFKA  PGL  ++V V V+EDR+LQIS +                   GKFM RF+LP+NA  DQVKASM  G+L+VTV KE   +P +V+ +EI+G
Sbjct:   47 TRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKP-DVKSIEISG 154          
BLAST of DN618390 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.292e-17
Identity = 53/109 (48.62%), Postives = 67/109 (61.47%), Query Frame = -3
Query:  203 THINWSETTRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLSVTVSKEMSLQPQNVRVVEITG 475
            T I+W ET  AHVFKA  PGL  ++V V V+EDR+LQIS +                   GKFM RF+LP+NA  DQVKASM  G+L+VTV KE    P +V+ +EI+G
Sbjct:   47 TRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNP-DVKSIEISG 154          
BLAST of DN618390 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17
Identity = 51/109 (46.79%), Postives = 66/109 (60.55%), Query Frame = -3
Query:  203 THINWSETTRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLSVTVSKEMSLQPQNVRVVEITG 475
            T I+W ET   HVFK   PGL  ++V V V+EDR+LQIS +                   GKFM RF+LP+NA  DQVKASM  G+L+VTV KE   +P+ V+ +EI+G
Sbjct:   47 TRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPE-VKSIEISG 154          
BLAST of DN618390 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.371e-17
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = -3
Query:  203 THINWSETTRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLSVTVSKEMSLQPQNVRVVEITG 475
            T ++W ET  AHVFKA  PGL  ++V V +++D++LQIS +                   GKFM RF+LP+NA  +QVKASM  G+L+VTV KE   +P +V+ +EI+G
Sbjct:   54 TRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKP-DVKAIEISG 161          
BLAST of DN618390 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.093e-16
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = -3
Query:  203 THINWSETTRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLSVTVSKEMSLQPQNVRVVEITG 475
            T ++W ET  AHVFKA  PG+  ++V V +++DR+LQIS +                   GKFM RF+LP+NA  DQVKA+M  G+L+VTV KE   +P+ V+ ++I+G
Sbjct:   51 TRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPE-VKTIDISG 158          
BLAST of DN618390 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.865e-16
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = -3
Query:  206 THINWSETTRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLSVTVSKEMSLQPQNVRVVEIT 475
            T I+W ET  AHVFKA  PGL  ++V V +++DR+LQIS +                   GKFM RF+LP+NA  DQVKA+M  G+L+VTV KE   +P+ V+ +EI+
Sbjct:   36 TRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPE-VKSIEIS 142          
BLAST of DN618390 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.436e-16
Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = -3
Query:  203 THINWSETTRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLSVTVSKEMSLQPQNVRVVEITG 475
            T ++W ET  AHVFKA  PGL  ++V V V++DR+LQIS +                   GKF+ RF+LP+NA  D+VKASM  G+L+VTV KE  ++   V+ +EI+G
Sbjct:   51 TRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKE-EIKKAEVKSIEISG 158          
BLAST of DN618390 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.155e-16
Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = -3
Query:  203 THINWSETTRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLSVTVSKEMSLQPQNVRVVEITG 475
            T ++W ET  AHVF+A  PGL  ++V V +++DR+LQIS +                   G FM RF+LP+NA  +QVKASM  G+L+VTV KE   +P +V+ +EI+G
Sbjct:   46 TRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKP-DVKAIEISG 153          
BLAST of DN618390 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.426e-16
Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = -3
Query:  203 THINWSETTRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLSVTVSKEMSLQPQNVRVVEITG 475
            T ++W ET  AHVFKA  PGL  ++V V +++DR+LQIS +                   GKF  RF+LP+NA  ++VKASM  G+L+VTV KE   +P +V+ +EI+G
Sbjct:   47 TRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKP-DVKAIEISG 154          
The following BLAST results are available for this feature:
BLAST of DN618390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
HS185_ARATH3.174e-2455.7518.5 kDa class IV heat shock protein OS=Arabidopsi... [more]
HSP11_SOLPE9.889e-1848.6217.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP12_SOLPE1.292e-1748.6217.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOLLC6.410e-1746.7917.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP16_SOYBN8.371e-1744.0418.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA1.093e-1643.1218.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_MEDSA1.865e-1645.3718.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP11_PEA2.436e-1644.0418.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP13_SOYBN4.155e-1643.1217.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP14_SOYBN5.426e-1643.1217.5 kDa class I heat shock protein OS=Glycine max... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02I01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002I01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618390 ID=DN618390; Name=DN618390; organism=Citrus sinensis; type=EST; length=495bp
TTTTTATTTGCAATGATAATTGATATTGATAATTTGAGTTTTACAATATC
CAAACTTACAACATAACACACACACACACACACACACACCTCGAATGCTC
TGCACAGTACTACACAAGTCTACACTTCAAAGCAAACACAAGCTCACATT
ATATATATATATATAGGCACAATAATATCACAAACCCAGAAATTTAGTCA
GACCCAGTAATTTCAACAACCCTAACATTTTGTGGCTGCAGTGACATCTC
CTTAGAGACTGTAACAGAGAGCAACCCATAATTCATGGAAGCCTTGACCT
GATCGGTAATAGCATTATCAGGCAGCTTAAACCTGCTCATGAACTTGCCA
TCATCGGTGCTTATTTGGAGCATTCTGTCTTCATCGACGAACACTATCAC
TTGGTCTCCCGTCAGCCCTGGAAAGTAAGCTTTGAACACGTGGGCTCTCG
TGGTCTCACTCCAGTTGATATGGGTTTGACGGGTTGGAAAAATCC
back to top