DN618388

Overview
NameDN618388
Unique NameDN618388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618388 vs. ExPASy Swiss-Prot
Match: ACLY_RAT (ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.895e-13
Identity = 48/129 (37.21%), Postives = 65/129 (50.39%), Query Frame = 2
Query:  107 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGXXXXXXXXXXXXHN--EEFYLNIVSERLG 487
            M+ K I E   K LL ++    S  +   K A+V   T++  L Q  PWL S  LVVKPD L  +RGK GLV +NL L    +++K  LG E  + + KG            H+  EEFY+ I + R G
Sbjct:    1 MSAKAISEQTGKELLYKYICTTSAIQNRFKYARVTPDTDWAHLLQDHPWLLSQSLVVKPDQLIKRRGKLGLVGVNLSLDGVKSWLKPRLGHEATVGKAKGFLKNFLIEPFVPHSQAEEFYVCIYATREG 129          
BLAST of DN618388 vs. ExPASy Swiss-Prot
Match: ACLY_MOUSE (ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.895e-13
Identity = 48/129 (37.21%), Postives = 65/129 (50.39%), Query Frame = 2
Query:  107 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGXXXXXXXXXXXXHN--EEFYLNIVSERLG 487
            M+ K I E   K LL ++    S  +   K A+V   T++  L Q  PWL S  LVVKPD L  +RGK GLV +NL L    +++K  LG E  + + KG            H+  EEFY+ I + R G
Sbjct:    1 MSAKAISEQTGKELLYKYICTTSAIQNRFKYARVTPDTDWAHLLQDHPWLLSQSLVVKPDQLIKRRGKLGLVGVNLSLDGVKSWLKPRLGHEATVGKAKGFLKNFLIEPFVPHSQAEEFYVCIYATREG 129          
BLAST of DN618388 vs. ExPASy Swiss-Prot
Match: ACLY_SHEEP (ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.407e-13
Identity = 47/129 (36.43%), Postives = 64/129 (49.61%), Query Frame = 2
Query:  107 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGXXXXXXXXXXXXH--NEEFYLNIVSERLG 487
            M+ K I E   K LL ++    S  +   K A+V   T++  L Q  PWL S  LVVKPD L  +RGK GLV +NL L    +++K  LG+E  + +  G            H   EEFY+ I + R G
Sbjct:    1 MSAKAISEQTGKELLYKYICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQSLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHTQEEEFYVCIYATREG 129          
BLAST of DN618388 vs. ExPASy Swiss-Prot
Match: ACLY_BOVIN (ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 46/129 (35.66%), Postives = 64/129 (49.61%), Query Frame = 2
Query:  107 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGXXXXXXXXXXXXH--NEEFYLNIVSERLG 487
            M+ K I E   K LL ++    S  +   K A+V   T++  L Q  PWL S  LVVKPD L  +RGK GL+ +NL L    +++K  LG+E  + +  G            H   EEFY+ I + R G
Sbjct:    1 MSAKAISEQTGKELLYKYICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQSLVVKPDQLIKRRGKLGLIGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHTQEEEFYVCIYATREG 129          
BLAST of DN618388 vs. ExPASy Swiss-Prot
Match: ACLY_HUMAN (ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.605e-12
Identity = 47/129 (36.43%), Postives = 64/129 (49.61%), Query Frame = 2
Query:  107 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGXXXXXXXXXXXXHN--EEFYLNIVSERLG 487
            M+ K I E   K LL +     S  +   K A+V   T++  L Q  PWL S  LVVKPD L  +RGK GLV +NL L    +++K  LG+E  + +  G            H+  EEFY+ I + R G
Sbjct:    1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREG 129          
BLAST of DN618388 vs. ExPASy Swiss-Prot
Match: ACL2_SCHPO (Probable ATP-citrate synthase subunit 2 OS=Schizosaccharomyces pombe GN=SPAC22A12.16 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.026e-11
Identity = 49/157 (31.21%), Postives = 72/157 (45.86%), Query Frame = 2
Query:  107 MARKKIREYDSKRLL-----------KEHFQRLSGR--------ELPIKSAQV-IESTNFDELA--------QKEPWLTSCKLVVKPDMLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGXXXXXXXXXXXXH--NEEFYLNIVSERLG 487
            M+ K IREYD K +L           KE ++ +S          + P+ +  +  EST + E+         Q+ PW+   KLV KPD L  +RGKSGL+ LN    +A  +++E  GK  ++    G            H  N E+Y+NI S R G
Sbjct:    1 MSAKSIREYDGKAVLAYWLNRSPSISKEEYKTVSATPAVQLAQIQFPLPTLVIPAESTTYREVVEDVFAKVEQEHPWVKETKLVAKPDQLIKRRGKSGLLKLNATWDEAKEWIRERAGKNQKVQHAVGYLTTFLVEPFVPHPPNTEYYININSVREG 157          
The following BLAST results are available for this feature:
BLAST of DN618388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ACLY_RAT1.895e-1337.21ATP-citrate synthase OS=Rattus norvegicus GN=Acly ... [more]
ACLY_MOUSE1.895e-1337.21ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 ... [more]
ACLY_SHEEP9.407e-1336.43ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV... [more]
ACLY_BOVIN1.229e-1235.66ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV... [more]
ACLY_HUMAN1.605e-1236.43ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 ... [more]
ACL2_SCHPO3.026e-1131.21Probable ATP-citrate synthase subunit 2 OS=Schizos... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02H24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618388 ID=DN618388; Name=DN618388; organism=Citrus sinensis; type=EST; length=492bp
GTTGTGTTCTCCGCTTCCTACCTGCTCAGAAAAATATATCTGTTGCGCTG
TCGTTTTTGCCTATTTTCGAAAGACTTGTCGTTTTGGTGAAAATCAGGCC
TGAGAAATGGCACGCAAGAAGATCAGAGAGTATGATTCGAAGAGATTGTT
GAAGGAGCACTTCCAGAGGCTCTCTGGTCGCGAGTTGCCTATCAAATCCG
CACAAGTTATCGAGTCAACTAATTTCGATGAGCTGGCACAAAAGGAACCC
TGGCTTACATCATGTAAACTAGTTGTGAAACCCGACATGTTGTTTGGAAA
GCGTGGGAAGAGTGGTTTGGTTGCTTTAAATCTGGATTTAGCTCAAGCTG
CTACTTTTGTGAAAGAGTGCCTTGGGAAAGAGATGGAGATGAGTGAATGT
AAAGGACCCATAACAACATTCATCATTGAACCTTTCATCCCGCACAATGA
GGAGTTTTACCTTAATATTGTCTCAGAGCGACTTGGATGCAG
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