DN618370

Overview
NameDN618370
Unique NameDN618370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618370 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.054e-32
Identity = 79/168 (47.02%), Postives = 96/168 (57.14%), Query Frame = 3
Query:  108 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELK-------RSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK----------------SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 542
            MCGGAIIS +IPP    R  ++T E++WP+LK       + SNK+     +DDDFEADFQGFK                       KPF F+A  K                ++    V+  EQA+KS++RKRKNQYRGIRQRPWGKWAAEIRDP KG R WLGTF+T
Sbjct:    1 MCGGAIISDFIPPP---RSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFKDDSAFDCEDDDDVFVNV------KPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDT 159          
BLAST of DN618370 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.262e-29
Identity = 77/162 (47.53%), Postives = 95/162 (58.64%), Query Frame = 3
Query:  108 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRS--SNKKYSKPI-----VDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK------SHGSTAVKHVE----QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 542
            MCGGAIIS +IPP    R +++T+E++WP+LK++   +KK SK        D +FEADFQGFK                       KPF F++  K      + GS   K V      A+KS  RKRKNQYRGIRQRPWGKWAAEIRDP +G R+WLGTF T
Sbjct:    1 MCGGAIISDFIPPP---RSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADV---KPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKT 156          
BLAST of DN618370 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.265e-21
Identity = 62/145 (42.76%), Postives = 71/145 (48.97%), Query Frame = 3
Query:  108 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 542
            MCGGAIIS Y P     + +KLTAE LW EL  S+          DDF   +   K                               + +    AVK  +  +    RKRKN YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT
Sbjct:    1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAA---------DDFWGFYSTSKLHP--------------------------TNQVNVKEEAVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNT 110          
BLAST of DN618370 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.265e-21
Identity = 64/156 (41.03%), Postives = 81/156 (51.92%), Query Frame = 3
Query:  108 MCGGAIISGYIPPTVPGRP---KKLTAEYLWPELKR----SSNKKYSKPIV---DDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVE-QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 542
            MCGGAII       + G P   ++ T   LWPE K+       +++    V   D+DFEADF+ F+                         F  +  R +  +      +  A KS +RKRKNQ+RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+
Sbjct:    1 MCGGAIIHH-----LKGHPEGSRRATEGLLWPEKKKPRWGGGGRRHFGGFVEEDDEDFEADFEEFEVDSGDSDLELGEEDDDDVVEIKPAAFKRALSRDNLSTITTAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNS 151          
BLAST of DN618370 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.783e-15
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 3
Query:  414 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 542
            ++  +R+RKN YRGIRQRPWGKWAAEIRDP+KGVRVWLGTF T
Sbjct:   39 ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKT 81          
BLAST of DN618370 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.690e-13
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 3
Query:  354 TFSAGRKSHGSTAVKHVEQAKKSTERK-RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 542
            T S+ R+   S   K  E   K  +RK +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T
Sbjct:  104 TSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFET 167          
BLAST of DN618370 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.220e-13
Identity = 29/39 (74.36%), Postives = 37/39 (94.87%), Query Frame = 3
Query:  426 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 542
            ++K+ ++Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT
Sbjct:   18 KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNT 56          
BLAST of DN618370 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.831e-12
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 3
Query:  348 PFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 542
            P +F+    SH     + + +A     R++K +YRG+RQRPWGKWAAEIRDP +  RVWLGTF+T
Sbjct:   45 PSSFARVDSSHNPIE-ESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDT 108          
BLAST of DN618370 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 3
Query:  405 EQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 542
            +Q +   ++ R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T
Sbjct:   25 DQHQPDQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 70          
BLAST of DN618370 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 35/54 (64.81%), Postives = 38/54 (70.37%), Query Frame = 3
Query:  381 GSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 542
            GS   K  E +  S ER +K  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T
Sbjct:   42 GSAVTKECESSM-SLERPKK--YRGVRQRPWGKWAAEIRDPHKATRVWLGTFET 92          
The following BLAST results are available for this feature:
BLAST of DN618370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RAP22_ARATH6.054e-3247.02Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH1.262e-2947.53Ethylene-responsive transcription factor RAP2-12 O... [more]
RAP23_ARATH1.265e-2142.76Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF1_ORYSJ1.265e-2141.03Ethylene-responsive transcription factor 1 OS=Oryz... [more]
ERF71_ARATH8.783e-1579.07Ethylene-responsive transcription factor ERF071 OS... [more]
EF109_ARATH3.690e-1356.25Ethylene-responsive transcription factor ERF109 OS... [more]
ERF73_ARATH8.220e-1374.36Ethylene-responsive transcription factor ERF073 OS... [more]
EF110_ARATH1.831e-1250.77Ethylene-responsive transcription factor ERF110 OS... [more]
EF113_ARATH3.124e-1263.04Ethylene-responsive transcription factor ERF113 OS... [more]
RAP26_ARATH4.080e-1264.81Ethylene-responsive transcription factor RAP2-6 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02H14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002H14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618370 ID=DN618370; Name=DN618370; organism=Citrus sinensis; type=EST; length=584bp
CTCTCTCAAGCCAACAAAAGCAAATTTTTACATTTAACCCATTCTCTTCT
AAAAATCTTTTCTCTTTAGTCCCTGAACAAACCAGAAGAAACGATAAACC
CTTAACCATGTGTGGAGGTGCTATCATTTCGGGCTACATCCCGCCCACCG
TGCCGGGCCGTCCAAAGAAGCTGACGGCGGAGTATCTCTGGCCGGAGCTG
AAGAGGTCATCCAACAAGAAGTACTCAAAGCCGATCGTCGACGATGATTT
CGAGGCTGATTTCCAAGGATTCAAGGACGATGAAGAAGAGTCTGACATTG
ATGGTGACGTGGACGTTGATGCCGACTTGATGATGGCTGATATTAAGCCT
TTTACTTTCTCAGCTGGTCGCAAGTCTCATGGATCTACAGCCGTGAAGCA
CGTTGAACAAGCTAAAAAATCCACAGAAAGAAAGAGGAAGAATCAATATA
GGGGAATTAGGCAGCGTCCATGGGGAAAATGGGCTGCTGAGATCCGTGAC
CCCACAAAAGGGGTTCGTGTCTGGCTAGGAACTTTCAATACCGCTGAAGA
AGCCGCTAGGGCTTATGATGCCGAGGCACGGAGG
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