FC921948

Overview
NameFC921948
Unique NameFC921948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13083 contig Csv1_Contig13083:367..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921948 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.384e-12
Identity = 47/111 (42.34%), Postives = 61/111 (54.95%), Query Frame = -1 
Query:    7 RPAATTMNLFPVS----DNSGQDVSARNMAAPRNWESMNLFPQQAGFA------PKNDTPNMIDSSLN-KPAPQTAQMTIFYGGQVIVFNDFPADKANEIMQLXSNGSSLS 306
            R   TTM+LFP      D+  QDV           +  NLFP+Q  F+      PK D   M  ++ + KP  QTA +TIFY GQVIVFNDF A+KA E++ L S G++ S
Sbjct:   61 RQPTTTMSLFPCEASNMDSMVQDV-----------KPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANS 160
The following BLAST results are available for this feature:
BLAST of FC921948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TI10A_ARATH1.384e-1242.34Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionC06054C12T7 RindPdigS Citrus sinensis cDNA clone C06054C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921948 ID=FC921948; Name=FC921948; organism=Citrus sinensis; type=EST; length=321bp
ACCATGGCTCAGTGAGCTCCCGTTGCTTNCTAATTGCATGATTTCATTTG
CTTTATCAGCAGGAAAATCATTGAACACAATCACTTGTCCGCCATAAAAT
ATAGTCATTTGAGCAGTTTGCGGAGCGGGCTTGTTTAAACTTGAATCTAT
CATGTTAGGGGTATCATTCTTAGGAGCAAAACCAGCTTGTTGAGGGAACA
AATTCATTGATTCCCAGTTTCGAGGAGCTGCCATGTTTCGAGCTGAAACA
TCTTGTCCAGAGTTGTCACTTACTGGAAACAAATTCATAGTTGTAGCTGC
TGGCCGCCGCGGGATCTCGGG
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