DN618363

Overview
NameDN618363
Unique NameDN618363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618363 vs. ExPASy Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.735e-30
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = -2
Query:  347 EKKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 586
            EKKPK +K  +HPPYFQMI EAL+AL +K GSSPYA+AKYME+KHKDELPANFRKIL +QLK+ AAKG LIKI+ASYKLS
Sbjct:   38 EKKPKSAKAVTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLS 117          
BLAST of DN618363 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.015e-18
Identity = 42/77 (54.55%), Postives = 61/77 (79.22%), Query Frame = -2
Query:  347 PKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 577
            PK+  +P+H PY +M++EA+ +L++++GSS YAIAK++E+KHK +LP NFRK+L VQLK   A G L K++ SYKLS
Sbjct:   42 PKKRASPTHLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLS 118          
BLAST of DN618363 vs. ExPASy Swiss-Prot
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.035e-18
Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = -2
Query:  347 KKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 583
            KKP+   TP+HP Y +M++EA+ AL+++SGSS  AI K++E+KHK  LPANFRKIL  Q+K   A G L K++ SYKL+
Sbjct:   47 KKPRV--TPAHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKLA 123          
BLAST of DN618363 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.465e-17
Identity = 43/82 (52.44%), Postives = 62/82 (75.61%), Query Frame = -2
Query:  350 KKP----KQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 583
            KKP    K+S TP+HPPYF+MI +A++ L++++GSS +AI K++EEK K  LP+NF+K+L  QLK F A   L+K++ SYKL
Sbjct:   42 KKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQK-SLPSNFKKLLLTQLKKFVASEKLVKVKNSYKL 122          
BLAST of DN618363 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.264e-17
Identity = 40/78 (51.28%), Postives = 59/78 (75.64%), Query Frame = -2
Query:  350 KKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 583
            KKPK   T SHP +F+MI++A+  L++++GSS YAI K++E+KHK +LP+NFRK+L   LK   A G L+K++ S+KL
Sbjct:   41 KKPKSKGTSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHLKKLVASGKLVKVKNSFKL 117          
BLAST of DN618363 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 43/82 (52.44%), Postives = 61/82 (74.39%), Query Frame = -2
Query:  347 KPKQSKTP----SHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 580
            KPK++  P    SHP Y +MI +A+++L++K+GSS YAIAK++EEK K +LPANF+K+L   LK   A G LIK++ S+KLS
Sbjct:   49 KPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLKKNVASGKLIKVKGSFKLS 129          
BLAST of DN618363 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.211e-15
Identity = 38/76 (50.00%), Postives = 55/76 (72.37%), Query Frame = -2
Query:  350 PKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 577
            PK+    SHP Y +MI +A++ L++++GSS YAI K++EEK K ELP  FRK+L + LK   A G L+K++AS+KL
Sbjct:   54 PKKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128          
BLAST of DN618363 vs. ExPASy Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.980e-14
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = -2
Query:  350 KQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 574
            K+  T SHP Y +MI +A++ L++++GSS YAI K++EEKHK  LP  FRK+L V LK   A   L+K++AS+K+
Sbjct:   55 KKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHK-SLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128          
BLAST of DN618363 vs. ExPASy Swiss-Prot
Match: H12_VOLCA (Histone H1-II OS=Volvox carteri GN=H1-II PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 6.370e-13
Identity = 37/81 (45.68%), Postives = 57/81 (70.37%), Query Frame = -2
Query:  347 EKKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKH-KDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 586
            +KKPK +  P+HPPY QM+T+A+++L+++ GSS  A+ K++E K+ KD     F K L++ LK F   G L+K++ SYKLS
Sbjct:   16 QKKPKTA--PTHPPYIQMVTDAILSLKERDGSSLPALKKFIEAKYGKDIHDKKFPKTLSLALKTFVKNGKLVKVKNSYKLS 94          
BLAST of DN618363 vs. ExPASy Swiss-Prot
Match: H11_VOLCA (Histone H1-I OS=Volvox carteri GN=H1-I PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.569e-11
Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = -2
Query:  347 EKKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKH-KDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 586
            EKKPK +  P+HPPY +M+ +A+  L++++GSS  A+ K++E K+ KD    NF K L+  +K F   G L+K++ S+KLS
Sbjct:   50 EKKPKAA--PTHPPYIEMVKDAITTLKERNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFVKGGKLVKVKGSFKLS 128          
The following BLAST results are available for this feature:
BLAST of DN618363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
H1_SOLPN5.735e-3077.50Histone H1 OS=Solanum pennellii PE=2 SV=1[more]
H1_MAIZE1.015e-1854.55Histone H1 OS=Zea mays PE=2 SV=2[more]
H1_WHEAT5.035e-1854.43Histone H1 OS=Triticum aestivum PE=2 SV=2[more]
H1_SOLLC1.465e-1752.44Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
H1_EUPES3.264e-1751.28Histone H1 OS=Euphorbia esula PE=2 SV=1[more]
H1_PEA6.155e-1652.44Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H11_ARATH5.211e-1550.00Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 ... [more]
H12_ARATH1.980e-1449.33Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 ... [more]
H12_VOLCA6.370e-1345.68Histone H1-II OS=Volvox carteri GN=H1-II PE=2 SV=3[more]
H11_VOLCA1.569e-1143.21Histone H1-I OS=Volvox carteri GN=H1-I PE=2 SV=3[more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02H11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618363 ID=DN618363; Name=DN618363; organism=Citrus sinensis; type=EST; length=587bp
GATCATTACATTCATTTATGCAAAACACGATCATACGCGGGAGTTGACAT
GTACATGATACTTCTTATCAGACAAGGAAGTTGAAACTAGTTTGTACTTT
ACTAGTATTATATCATACATATTACTACTGAGCAGTAGCTTTCTTGGCTT
TCTTAGCAGCAGAGGACTTGATGGATTTGGGCTGCTTTGGTTTGGCAGCA
GCCGATTTCTTTGCCTTCTTAGGCGGAGGAGGAGCGGCGGCGGCAGACTC
TGCTTTGATTTTAGCTGCAGCAGTTACGGACCTTGTTTTCCTTGGGGCCT
TGGCCTTGGTCTTGATCTCTTTTTTGGTTTTGCCAGCTGCCGCTTCAGAG
AGCTTGTAAGAGGCCCTGATCTTGATGAGATTTCCTTTCGCAGCGAAGTG
CTTCAGCTGCACTGCCAATATTTTCCTGAAATTCGCTGGGAGCTCATCTT
TGTGCTTCTCTTCCATGTACTTGGCTATTGCGTATGGGCTTGAACCGCTC
TTATCTTGCAGCGCCATCAGTGCCTCCGTTATCATCTGAAAATAAGGAGG
ATGAGAGGGGGTTTTGGACTGCTTTGGCTTCTTCTCT
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