DN618349

Overview
NameDN618349
Unique NameDN618349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618349 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 7.075e-42
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = -2
Query:  353 PTKPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 607
            PT PP VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  360 PTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of DN618349 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.207e-41
Identity = 63/92 (68.48%), Postives = 79/92 (85.87%), Query Frame = -2
Query:  332 PTKPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 607
            P KPP  CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  368 PIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of DN618349 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.076e-37
Identity = 61/93 (65.59%), Postives = 70/93 (75.27%), Query Frame = -2
Query:  329 PTKPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 607
            P KPP  CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  249 PVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of DN618349 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.252e-30
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = -2
Query:  356 PTKPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 607
            P+ P  VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  379 PSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of DN618349 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 8.689e-24
Identity = 42/86 (48.84%), Postives = 52/86 (60.47%), Query Frame = -2
Query:  353 PPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 598
            PP  CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  391 PPQQCDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of DN618349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ORYA_ORYSJ7.075e-4276.47Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH1.207e-4168.48Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC3.076e-3765.59Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ1.252e-3061.90Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ8.689e-2448.84Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02H04_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618349 ID=DN618349; Name=DN618349; organism=Citrus sinensis; type=EST; length=608bp
AAGAATCGTTAAATATCAATTCATAAAAGCCTCCGCTGAATGATGCCAGG
GATTTGGTGGAGGACATTGGAAATAGATAACAACAATTTGTTTGTGCATT
GTTCGGATTCAACGCAGATAGATAACTTACAACGCTATATACAAAACCAA
CGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTACATTAACGTT
TGAAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAAACTCATTCAC
AAGCACGAATATCTTCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTG
CCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGCCCAG
TAAGGTTTAGCAGGGGTGCGTCGCAATGCCCTCACTCCCAATGGGTTGTC
CTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAGTCAT
GTGGGCAGCAGCTATAGTGGTCATCACAGCAGGTGGCAGCCTCAAGCGGG
CAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGCAGCA
AGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGAGGCT
TTGTTGGA
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