DN618334

Overview
NameDN618334
Unique NameDN618334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618334 vs. ExPASy Swiss-Prot
Match: GLPQ2_ARATH (Probable glycerophosphoryl diester phosphodiesterase 2 OS=Arabidopsis thaliana GN=GPDL2 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 8.986e-59
Identity = 107/197 (54.31%), Postives = 136/197 (69.04%), Query Frame = 1
Query:  160 CGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSFVAYRLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQVFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXXXXXXXXXXXXNYISSPD 732
            CGVI      AQ+ AQ     S W TLTGDPP V+ARGGFSG+FPDSS+ AY   ++TS P  +LWCDVQLTKD  GICFPDL + N+S+I  V+ T+QK+Y VNGVPT GWF+ID++L DL ++ L +G+ SR+ KFDGN   I+TVQ ++ Q+KP   WLN+QHDAFYAQHN                ++ISSP+
Sbjct:   13 CGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSSYDAYNFAILTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVPTSGWFTIDFSLKDLKDVNLIRGILSRSKKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDAFYAQHNLSMSSFLVAASKTVLIDFISSPE 209          
BLAST of DN618334 vs. ExPASy Swiss-Prot
Match: GLPQ3_ARATH (Probable glycerophosphoryl diester phosphodiesterase 3 OS=Arabidopsis thaliana GN=GPDL3 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.028e-54
Identity = 102/197 (51.78%), Postives = 132/197 (67.01%), Query Frame = 1
Query:  160 CGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSFVAYRLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQVFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXXXXXXXXXXXXNYISSPD 732
            CGV+      AQ+ AQ S  TSRWQTL GD P V+ARGGFSG++PDSS  AY+L  +TS   V+LWCD+QLTKD  GICFPDL L NAS I +V+  ++K+Y VNGV T GWF  D++L +L N +L +G+ SRTD+FDGNG+ I T++D+   +   G WLN+QHDAFY Q N                ++ISSP+
Sbjct:   21 CGVVLIHLFAAQIDAQRS--TSRWQTLNGDAPLVIARGGFSGLYPDSSIAAYQLATLTSVADVVLWCDLQLTKDGLGICFPDLNLANASTIDRVYPNREKSYSVNGVTTKGWFPNDFSLTELQNFLLIRGILSRTDRFDGNGYLISTIEDVVTTLNREGFWLNVQHDAFYEQQNLSMSSFLLSVSRTVSIDFISSPE 215          
BLAST of DN618334 vs. ExPASy Swiss-Prot
Match: GLPQ1_ARATH (Probable glycerophosphoryl diester phosphodiesterase 1 OS=Arabidopsis thaliana GN=GPDL1 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.343e-54
Identity = 100/186 (53.76%), Postives = 127/186 (68.28%), Query Frame = 1
Query:  175 QVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSFVAYRLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQVFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXXXXXXXXXXXXNYISSPD 732
            Q+ AQ S   S WQTLTGD P V+ARGGFSG+ PDSS  AY     TS P  +LWCDVQLTKD  G+CFPD+K+ NASNI  V+  ++ +YL+NGVPT  WF+ID+   DL+ +IL QG+ SR+  FDGN + I TV+D++ Q+KP G WLN+QHDAFYAQHN                +Y+SSP+
Sbjct:   32 QLFAQRSK--SPWQTLTGDAPLVIARGGFSGLLPDSSLDAYSFVSQTSVPGAVLWCDVQLTKDAIGLCFPDVKMMNASNIQDVYPKRKTSYLLNGVPTQDWFTIDFNFKDLTKVILKQGILSRSAAFDGNSYGISTVKDISTQLKPEGFWLNVQHDAFYAQHNLSMSSFLLSISKTVIIDYLSSPE 215          
The following BLAST results are available for this feature:
BLAST of DN618334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GLPQ2_ARATH8.986e-5954.31Probable glycerophosphoryl diester phosphodiestera... [more]
GLPQ3_ARATH1.028e-5451.78Probable glycerophosphoryl diester phosphodiestera... [more]
GLPQ1_ARATH1.343e-5453.76Probable glycerophosphoryl diester phosphodiestera... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02G19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618334 ID=DN618334; Name=DN618334; organism=Citrus sinensis; type=EST; length=733bp
CTCTCTCTCTCTCTCTCTCTCTCTAAAGAGGAAAAATCTCGCACATTCAT
CAAGAGGATCGGCAGGAACGGTGGAGCTCCGGCGGAGTTAAATTTGTCGG
CAATGTGTAACACACGCGCTCTTGGCCTGCTACTCGTTTCAGCTCTGGTT
GTACTTCACTGTGGAGTTATAGCTCAAGTCTCGGCTCAGGGATCTAATGC
TACGAGTCGATGGCAGACACTAACCGGAGATCCACCATTTGTAGTAGCAC
GTGGGGGATTTTCGGGTATATTTCCAGATTCTAGTTTCGTAGCTTATCGT
TTGACGCTGATTACGAGTGCGCCCAGTGTTATCTTATGGTGTGATGTGCA
ATTGACCAAAGATGAAGCTGGGATTTGCTTCCCTGATCTTAAGCTTGATA
ATGCTTCTAACATCGCTCAAGTCTTTAAGACTCAGCAAAAGAATTATCTT
GTTAATGGGGTCCCAACCCCAGGATGGTTTTCCATTGACTACACGCTTAA
TGACCTATCGAATATAATCTTAAATCAAGGAGTCTATTCTCGAACCGATA
AGTTTGATGGCAATGGGTTCCAAATCCTCACTGTTCAGGATATGGCAAGA
CAAATAAAACCACCAGGCTTATGGTTGAATATTCAGCACGATGCATTCTA
CGCACAACACAATTTGAGTATGAGAAGCTTTGTACTTTCTGTATCCAGAA
GTGTAGTTGTCAATTACATCTCTTCACCTGATG
back to top