DN618332

Overview
NameDN618332
Unique NameDN618332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.709e-64
Identity = 117/145 (80.69%), Postives = 133/145 (91.72%), Query Frame = -3
Query:  235 TAGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 669
            T+GPLRPVVH QTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT++LVK+T +MKSFKA+DK+R+ER N+RH GAR
Sbjct:   49 TSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193          
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.138e-62
Identity = 117/145 (80.69%), Postives = 130/145 (89.66%), Query Frame = -3
Query:  235 TAGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 669
            T+GPLRPVVH QTLKYNMK+RAG+GFTLEELK AGIPKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQVQG YMPI   K  ++LVK+T D+K+FKAYDK+R+ER N RH GAR
Sbjct:   49 TSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGAR 193          
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.942e-62
Identity = 117/145 (80.69%), Postives = 129/145 (88.97%), Query Frame = -3
Query:  235 TAGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 669
            TAGPLRPVVH QTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG+S+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK  ++LVK+T +MKS  AYDK+R+ER N+RH GAR
Sbjct:   49 TAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGAR 193          
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.378e-62
Identity = 116/145 (80.00%), Postives = 129/145 (88.97%), Query Frame = -3
Query:  235 TAGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 669
            TAGPLRPVVH QTLKYNMK+R G+GFTLEELK+AGIPKKLAPTIG++VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK   +LVK+T +MKS KA+DK+R+ER N+RH GAR
Sbjct:   49 TAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGAR 193          
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.442e-58
Identity = 110/145 (75.86%), Postives = 124/145 (85.52%), Query Frame = -3
Query:  235 TAGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 669
            TAGP+RPVVHAQTL YNMK+RAG+GFTLEELKAAGIPKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT++LVK+T DMK F AYDK+R+E  N+RH G R
Sbjct:   49 TAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVR 193          
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.479e-50
Identity = 99/146 (67.81%), Postives = 116/146 (79.45%), Query Frame = -3
Query:  232 TAGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARL 669
            TAG LRP+VH QTLKYNMK+R+GRGF+LEELKAAGIPKKLAPTIG++VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TATQV G YMPI  EK  + L KV + MKSF AY KLR+ER NERH GAR+
Sbjct:   45 TAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERHIGARM 190          
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.709e-42
Identity = 85/144 (59.03%), Postives = 107/144 (74.31%), Query Frame = -3
Query:  235 AGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 666
            AG L+P+V  QT+KYN K R GRGFTLEELK AGIP K APT+G++VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q +G  +P+   KP ++LVK+T DMK    Y KLRIER N R  G R
Sbjct:   51 AGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKLRIERVNARLKGMR 194          
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 3.223e-41
Identity = 86/144 (59.72%), Postives = 106/144 (73.61%), Query Frame = -3
Query:  235 AGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 666
            +GPLRPVV   T++Y+ K+RAGRGFTLEELKAAGI KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ+ GP MPI           +++D K+FKA+  LR+ RAN R FG R
Sbjct:   52 SGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGIR 195          
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.497e-38
Identity = 80/144 (55.56%), Postives = 102/144 (70.83%), Query Frame = -3
Query:  235 AGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 666
            AGPLRP+V   T++YN K+RAGRGFTLEELKAAGI K++A TIG++VD RR+NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ+ GP MPI +         +T++ K F A+  LR+ RAN R FG R
Sbjct:   52 AGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFGIR 195          
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.356e-38
Identity = 79/144 (54.86%), Postives = 105/144 (72.92%), Query Frame = -3
Query:  235 AGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 666
            AGP+RP+V   T++Y+ K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ+ GP MPI           ++++ K+FKA+  LR+ RAN R FG R
Sbjct:   52 AGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIR 195          
The following BLAST results are available for this feature:
BLAST of DN618332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL131_ARATH2.709e-6480.6960S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL133_ARATH1.138e-6280.6960S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_BRANA1.942e-6280.6960S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA7.378e-6280.0060S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL132_ARATH8.442e-5875.86Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC6.479e-5067.8160S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_CHLSW1.709e-4259.0360S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_DANRE3.223e-4159.7260S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_ICTPU1.497e-3855.5660S ribosomal protein L13 OS=Ictalurus punctatus G... [more]
RL13_CHICK4.356e-3854.8660S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618332 ID=DN618332; Name=DN618332; organism=Citrus sinensis; type=EST; length=671bp
TTTTTTTAAAAAACAAGACAACCATAGGGTAGGTCCATTGCAAATAATAT
AACCAAGAAATCTTCCCACATTCAAAATGAAATAACTTCTTCAAACCTAA
AGCTAAGAGATTGAAATCACTATAACAAAAAGATTCAAAATTGAAATGTA
AAATGTAGTGCCACACTCAATGTGCTGCTTAAACAAGTTTGTTTACTTCT
TCTCTTCCTTTTCAGCCTCTGCAGCCTTCTTCAACCTGGCACCAAAATGG
CGCTCGTTCGCACGCTCAATCCGGAGCTTGTCATAAGCCTTGAAGGACTT
CATATCTTGAGTAACCTTAACAAGGTCGACAGTAGGCTTCTCAAGAGTAA
TGGGCATGTAAGGTCCTTGTACTTGAGTTGCTGTTGCCAATTCCTCAGGA
GCAGAATCACCAGCCTTAAACTTGCGAGCACGTCTTGGGAAAACAACCAA
CTTGGCCTTGTAAGTCTTCAGCCTCTGAACATTAGATTGAAGACCCTCAA
GAGAACGGTTCTTGCGTCGATGATCGACTGAGACGCCAATTGTTGGAGCC
AGTTTCTTGGGAATTCCAGCAGCCTTGAGTTCCTCAAGAGTAAAGCCTCT
GCCAGCCCTTAATTTCATGTTATATTTCAGAGTCTGGGCATGAACGACGG
GGCGAAGAGGACCAGCAGTAG
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