DN618332
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 2.709e-64 Identity = 117/145 (80.69%), Postives = 133/145 (91.72%), Query Frame = -3 Query: 235 TAGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 669 T+GPLRPVVH QTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI EKPT++LVK+T +MKSFKA+DK+R+ER N+RH GAR Sbjct: 49 TSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 1.138e-62 Identity = 117/145 (80.69%), Postives = 130/145 (89.66%), Query Frame = -3 Query: 235 TAGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 669 T+GPLRPVVH QTLKYNMK+RAG+GFTLEELK AGIPKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQVQG YMPI K ++LVK+T D+K+FKAYDK+R+ER N RH GAR Sbjct: 49 TSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGAR 193
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 1.942e-62 Identity = 117/145 (80.69%), Postives = 129/145 (88.97%), Query Frame = -3 Query: 235 TAGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 669 TAGPLRPVVH QTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG+S+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS EELA ATQVQG YMPI EK ++LVK+T +MKS AYDK+R+ER N+RH GAR Sbjct: 49 TAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGAR 193
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 7.378e-62 Identity = 116/145 (80.00%), Postives = 129/145 (88.97%), Query Frame = -3 Query: 235 TAGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 669 TAGPLRPVVH QTLKYNMK+R G+GFTLEELK+AGIPKKLAPTIG++VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS EELA ATQVQG YMPI EK +LVK+T +MKS KA+DK+R+ER N+RH GAR Sbjct: 49 TAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGAR 193
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 8.442e-58 Identity = 110/145 (75.86%), Postives = 124/145 (85.52%), Query Frame = -3 Query: 235 TAGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 669 TAGP+RPVVHAQTL YNMK+RAG+GFTLEELKAAGIPKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR K GDSA +ELA ATQVQ +MPI E PT++LVK+T DMK F AYDK+R+E N+RH G R Sbjct: 49 TAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVR 193
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 6.479e-50 Identity = 99/146 (67.81%), Postives = 116/146 (79.45%), Query Frame = -3 Query: 232 TAGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARL 669 TAG LRP+VH QTLKYNMK+R+GRGF+LEELKAAGIPKKLAPTIG++VDHRR+NRSLEGLQ+NVQRL+ + +LVVFPRRA + + P TATQV G YMPI EK + L KV + MKSF AY KLR+ER NERH GAR+ Sbjct: 45 TAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERHIGARM 190
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.709e-42 Identity = 85/144 (59.03%), Postives = 107/144 (74.31%), Query Frame = -3 Query: 235 AGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 666 AG L+P+V QT+KYN K R GRGFTLEELK AGIP K APT+G++VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR +K KA +++ + + A+Q +G +P+ KP ++LVK+T DMK Y KLRIER N R G R Sbjct: 51 AGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKLRIERVNARLKGMR 194
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3) HSP 1 Score: 168.318 bits (425), Expect = 3.223e-41 Identity = 86/144 (59.72%), Postives = 106/144 (73.61%), Query Frame = -3 Query: 235 AGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 666 +GPLRPVV T++Y+ K+RAGRGFTLEELKAAGI KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS EEL ATQ+ GP MPI +++D K+FKA+ LR+ RAN R FG R Sbjct: 52 SGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGIR 195
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3) HSP 1 Score: 159.458 bits (402), Expect = 1.497e-38 Identity = 80/144 (55.56%), Postives = 102/144 (70.83%), Query Frame = -3 Query: 235 AGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 666 AGPLRP+V T++YN K+RAGRGFTLEELKAAGI K++A TIG++VD RR+NRS E L NVQRLK Y++KL++FPR+ K GDS EE+ ATQ+ GP MPI + +T++ K F A+ LR+ RAN R FG R Sbjct: 52 AGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFGIR 195
BLAST of DN618332 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2) HSP 1 Score: 157.918 bits (398), Expect = 4.356e-38 Identity = 79/144 (54.86%), Postives = 105/144 (72.92%), Query Frame = -3 Query: 235 AGPLRPVVHAQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 666 AGP+RP+V T++Y+ K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+PEEL ATQ+ GP MPI ++++ K+FKA+ LR+ RAN R FG R Sbjct: 52 AGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIR 195 The following BLAST results are available for this feature:
BLAST of DN618332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >DN618332 ID=DN618332; Name=DN618332; organism=Citrus sinensis; type=EST; length=671bpback to top |