DN618327

Overview
NameDN618327
Unique NameDN618327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618327 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 9.254e-65
Identity = 124/159 (77.99%), Postives = 135/159 (84.91%), Query Frame = -1
Query:  113 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY-GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQY 583
            CKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVRKW         GK LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FY G+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  316 CKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of DN618327 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 2.692e-64
Identity = 118/159 (74.21%), Postives = 137/159 (86.16%), Query Frame = -1
Query:  110 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 583
            CKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW         GK LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN DA+++G+FYG+ AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  307 CKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of DN618327 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 2.977e-63
Identity = 113/158 (71.52%), Postives = 136/158 (86.08%), Query Frame = -1
Query:  110 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 583
            CKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW         GK LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYGK AQQ  +PVPEGCTD  A+N+DPTARSDDGSC YT
Sbjct:  306 CKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of DN618327 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.131e-62
Identity = 116/157 (73.89%), Postives = 128/157 (81.53%), Query Frame = -1
Query:  113 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 583
            CKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK+         GK LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+AN DAI  G FYGK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  316 CKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of DN618327 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 1.383e-60
Identity = 110/159 (69.18%), Postives = 129/159 (81.13%), Query Frame = -1
Query:  107 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 583
            C GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVRKW         GK LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN+DAI  G F+GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  314 CTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of DN618327 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.434e-49
Identity = 97/122 (79.51%), Postives = 105/122 (86.07%), Query Frame = -1
Query:  218 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 583
            C GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW         GK LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN DA+ +G FYG
Sbjct:  316 CIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of DN618327 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.705e-48
Identity = 91/123 (73.98%), Postives = 106/123 (86.18%), Query Frame = -1
Query:  215 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGK 583
            CKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN+DA+++G FYGK
Sbjct:  303 CKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425          
BLAST of DN618327 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 2.290e-47
Identity = 91/121 (75.21%), Postives = 104/121 (85.95%), Query Frame = -1
Query:  221 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 583
            CKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVRKW         GK LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG ANEDAI+SG+F+
Sbjct:  318 CKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of DN618327 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.701e-47
Identity = 90/120 (75.00%), Postives = 103/120 (85.83%), Query Frame = -1
Query:  224 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 583
            CKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVRKW         GK LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN+DAI+ G F
Sbjct:  316 CKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of DN618327 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 3.656e-45
Identity = 86/121 (71.07%), Postives = 103/121 (85.12%), Query Frame = -1
Query:  221 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 583
            CKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR+W          + LVNSKE  PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGEANEDA+++G+F+
Sbjct:  312 CKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432          
The following BLAST results are available for this feature:
BLAST of DN618327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_LARTR9.254e-6577.99Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ2.692e-6474.21Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU2.977e-6371.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.131e-6273.89Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.383e-6069.18Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO1.434e-4979.51Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU2.705e-4873.98Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.290e-4775.21Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR8.701e-4775.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE3.656e-4571.07Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618327 ID=DN618327; Name=DN618327; organism=Citrus sinensis; type=EST; length=583bp
GGGGGGGACCCCCCGTTTTTTTTGAATGGAAATGCAACAATATTATTTGA
ATATCTCACATCCTAAGCAAAGTGCGACACTTCTCAACCCTTAGAAACAA
GGCCTAAAGCGTGTATTGGCAGCTTCCATCATCACTTCTTGCAGTTGGAT
CAAAGTTTTCTGCAGTAGGATCAGTACATCCTTCAGGAACTGGAACATTC
ATTTGCTGGGCTGCTTTGCCATAGAAATTTCCACTCTGAATAGCATCTTC
ATTAGCTTCACCAAGAGCGGCCTCACTCAAATACTTGTCAGCCAACTGAA
CTCTCTTCACATTCTCTTGCTCTTGCACAATCATGTTTCCGTACTCGAGC
AGCTTCTCCATTGTCATCCTTGGTTGCTCGAATGTTGGGGCTGCTTCCTT
TGAGTTCACAAGGCTCTTGCCAATGCTTCCAACACCAACACCAGAGATCC
ACTTCCTCACCTCATCATCATAGACTCTGGCCCTCAGGGCTCCAAAGAAA
TCAATGGATTGGCCGGGGAAGGTGTCGACAAGCTTGACAATGTCGTCATC
AGCCACATTGTCATTCCTGAAGATACCCTTGCA
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