DN618324

Overview
NameDN618324
Unique NameDN618324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618324 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.229e-35
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 611
            KTRGMGA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK
Sbjct:    3 KTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75          
BLAST of DN618324 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.887e-34
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 611
            KT GMGA RKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK
Sbjct:    3 KTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75          
BLAST of DN618324 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.352e-32
Identity = 68/73 (93.15%), Postives = 68/73 (93.15%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 611
            KTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK
Sbjct:    3 KTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75          
BLAST of DN618324 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 6.281e-30
Identity = 65/73 (89.04%), Postives = 66/73 (90.41%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 611
            KTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK
Sbjct:    3 KTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75          
BLAST of DN618324 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.891e-26
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 611
            K RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct:    3 KPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 76          
BLAST of DN618324 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.658e-25
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 611
            K RG+   RK +SHRR QRW DK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct:    3 KPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 76          
BLAST of DN618324 vs. ExPASy Swiss-Prot
Match: RS23_DROME (40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.083e-25
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 611
            K RG+   RK  +HRR QRWADK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct:    3 KPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 76          
BLAST of DN618324 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.083e-25
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 611
            K +G+   RKLK+HR+ QRW DK YKK+H+G  WK  PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIK
Sbjct:    3 KPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIK 76          
BLAST of DN618324 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.945e-25
Identity = 53/74 (71.62%), Postives = 60/74 (81.08%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 611
            K RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct:    3 KPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 76          
BLAST of DN618324 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.945e-25
Identity = 53/74 (71.62%), Postives = 60/74 (81.08%), Query Frame = 3
Query:  393 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 611
            K RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct:    3 KPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 76          
The following BLAST results are available for this feature:
BLAST of DN618324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RS23_FRAAN2.229e-3597.2640S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES1.887e-3495.8940S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH1.352e-3293.1540S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH6.281e-3089.0440S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_LUMRU1.891e-2675.6840S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_DERVA4.658e-2572.9740S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_DROME6.083e-2572.9740S ribosomal protein S23 OS=Drosophila melanogast... [more]
RS23_CAEEL6.083e-2571.6240S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_SPOFR7.945e-2571.6240S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_PAPDA7.945e-2571.6240S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618324 ID=DN618324; Name=DN618324; organism=Citrus sinensis; type=EST; length=611bp
GCGTCCTCTTGCAACTCTCAAGCTCCAAAGTCGTTCGTTACAGTCAAAAA
TCCTCTTCGTAACGCCAACATGGGGTAAGGTTTCTCATTTCCTCTGATAG
TGTTTGTTTCTCTAGAAAGCTCAAAACTTTTTGAGAAAATTTTGTTTGTT
CTCGTGTGTTTTTTTTTATTATAGAGATCGCTATTGTTAATGACTAAATT
TGATTGTTATTTTTTTAAAAAAAATTAAGTAGTGAAAGTGTTTCATAAAT
TGCGAGTGCGTTTGCTAGCGGTAGAAATTAATTTGATTTGCAGAATATGG
ATTGGCCGGTGATGTGAGAATTTATATTTGCTACTCTTGATGGGTTTGCT
TTAAATCCATCTGATGATTCTTATCCACCAAGATCTCTGAGGAAGACACG
TGGAATGGGAGCGGGTCGCAAGCTGAAGAGCCACCGCAGAAGACAAAGGT
GGGCTGATAAGTCATACAAGAAATCCCACCTTGGCAATGAATGGAAGAAG
CCATTTGCTGGCTCTTCCCATGCAAAAGGCATTGTTCTTGAGAAAATCGG
TATCGAGGCAAAGCAGCCCAACTCCGCTATCAGAAAATGTGCTCGAGTTC
AGCTGATCAAG
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