DN618322

Overview
NameDN618322
Unique NameDN618322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618322 vs. ExPASy Swiss-Prot
Match: ACSL6_RAT (Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.006e-16
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = -1
Query:  309 VAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYA 602
            V IV  D + +  WA  +GI+  N ++LC     + A+L DM  LG+E+ L  FE VKA+ +  + F+V+NGLLTPT K KRP+ ++YF K I ++Y+
Sbjct:  598 VGIVVPDPEVMPCWAQKKGIE-GNYQELCKSKELKKAILDDMVMLGKESGLHSFEQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELYS 694          
BLAST of DN618322 vs. ExPASy Swiss-Prot
Match: ACSL1_HUMAN (Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.927e-16
Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  303 VAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 602
            +AIV  D + L +WA   G +  + E+LC +   + A+L DM  LG+++ L+ FE VK +TL  E F+++NGLLTPT K KRP+ + YF   I D+Y+ +
Sbjct:  598 IAIVVPDVETLCSWAQKRGFE-GSFEELCRNKDVKKAILEDMVRLGKDSGLKPFEQVKGITLHPELFSIDNGLLTPTMKAKRPELRNYFRSQIDDLYSTI 696          
BLAST of DN618322 vs. ExPASy Swiss-Prot
Match: ACSL1_MOUSE (Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.522e-16
Identity = 41/100 (41.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  303 VAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 602
            +A+V  D ++L +WA   G+Q  + E+LC +     A+L D+  LG+EA L+ FE VK + +  E F+++NGLLTPT K KRP+ + YF   I ++YA +
Sbjct:  599 IAVVVPDVESLPSWAQKRGLQ-GSFEELCRNKDINKAILDDLLKLGKEAGLKPFEQVKGIAVHPELFSIDNGLLTPTLKAKRPELRNYFRSQIDELYATI 697          
BLAST of DN618322 vs. ExPASy Swiss-Prot
Match: ACSL6_MOUSE (Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.112e-15
Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = -1
Query:  312 VAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMY 602
            V IV  D + + +WA  +GI+    ++LC     + A+L DM  LG+E+ L  FE VKA+ +  + F+V+NGLLTPT K KRP+ ++YF K I ++Y
Sbjct:  598 VGIVVPDPEVMPSWAQKKGIE-GTYQELCMKKELKKAILDDMVMLGKESGLHSFEQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELY 693          
BLAST of DN618322 vs. ExPASy Swiss-Prot
Match: ACSL5_HUMAN (Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.898e-15
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = -1
Query:  303 VAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 602
            V +V  D D L ++AA  G++  + E+LC +   R A+L D+  +G+E+ L+ FE VKA+ L  EPF++ENGLLTPT K KR +  +YF   I  +Y  +
Sbjct:  583 VGVVVPDTDVLPSFAAKLGVK-GSFEELCQNQVVREAILEDLQKIGKESGLKTFEQVKAIFLHPEPFSIENGLLTPTLKAKRGELSKYFRTQIDSLYEHI 681          
BLAST of DN618322 vs. ExPASy Swiss-Prot
Match: ACSL1_CAVPO (Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.898e-15
Identity = 39/100 (39.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  303 VAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 602
            +AIV  D ++L +WA   G +  + E+LC +   + A+L DM  +G+++ L+ FE V+ + L  E F+V+NGLLTPT K KRP+ + YF   I ++Y+ +
Sbjct:  598 IAIVVPDAESLASWARKRGFE-GSFEELCRNKDVKKAILEDMVRIGKDSGLKSFEQVRGIALHPELFSVDNGLLTPTMKAKRPELRNYFRSQIDELYSTI 696          
BLAST of DN618322 vs. ExPASy Swiss-Prot
Match: ACSL6_HUMAN (Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 2.478e-15
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = -1
Query:  309 VAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYA 602
            V IV  D + + +WA   GI+      LC +   + A+L DM  LG+E+ L  FE VKA+ +  + F+V+NGLLTPT K KRP+ ++YF K I ++Y+
Sbjct:  598 VGIVVPDPEVMPSWAQKRGIE-GTYADLCTNKDLKKAILEDMVRLGKESGLHSFEQVKAIHIHSDMFSVQNGLLTPTLKAKRPELREYFKKQIEELYS 694          
BLAST of DN618322 vs. ExPASy Swiss-Prot
Match: ACSL1_RAT (Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.237e-15
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  303 VAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 602
            +AIV  D + L +WA   G Q  + E+LC +     A+L DM  LG+ A L+ FE VK + +  E F+++NGLLTPT K KRP+ + YF   I ++Y+ +
Sbjct:  599 IAIVVPDVEILPSWAQKRGFQ-GSFEELCRNKDINKAILEDMVKLGKNAGLKPFEQVKGIAVHPELFSIDNGLLTPTLKAKRPELRNYFRSQIDELYSTI 697          
BLAST of DN618322 vs. ExPASy Swiss-Prot
Match: ACSL5_MOUSE (Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14
Identity = 38/100 (38.00%), Postives = 63/100 (63.00%), Query Frame = -1
Query:  303 VAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 602
            + +V  D D+L ++AA  G++  + E+LC +   + A+L D+  +G+E  L+ FE VK++ +  EPFT+ENGLLTPT K KR +  ++F   I  +Y  +
Sbjct:  583 IGVVVPDPDSLPSFAAKIGVK-GSFEELCKNQCVKEAILEDLQKIGKEGGLKSFEQVKSIFVHPEPFTIENGLLTPTLKAKRVELAKFFQTQIKSLYESI 681          
BLAST of DN618322 vs. ExPASy Swiss-Prot
Match: ACSL5_RAT (Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.776e-13
Identity = 36/100 (36.00%), Postives = 63/100 (63.00%), Query Frame = -1
Query:  303 VAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 602
            + +V  D ++L ++AA  G++  + E+LC +   + A+L D+  +G+E  L+ FE VK++ +  EPF++ENGLLTPT K KR +  ++F   I  +Y  +
Sbjct:  583 IGVVVPDPESLPSFAAKIGVK-GSFEELCQNQCVKKAILEDLQKVGKEGGLKSFEQVKSIFVHPEPFSIENGLLTPTLKAKRVELAKFFQTQIKSLYESI 681          
The following BLAST results are available for this feature:
BLAST of DN618322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ACSL6_RAT1.006e-1642.86Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norv... [more]
ACSL1_HUMAN2.927e-1642.00Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapien... [more]
ACSL1_MOUSE6.522e-1641.00Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculu... [more]
ACSL6_MOUSE1.112e-1542.27Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculu... [more]
ACSL5_HUMAN1.898e-1542.00Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapien... [more]
ACSL1_CAVPO1.898e-1539.00Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porce... [more]
ACSL6_HUMAN2.478e-1541.84Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapien... [more]
ACSL1_RAT3.237e-1541.00Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norv... [more]
ACSL5_MOUSE1.606e-1438.00Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculu... [more]
ACSL5_RAT1.776e-1336.00Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norv... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02G13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618322 ID=DN618322; Name=DN618322; organism=Citrus sinensis; type=EST; length=602bp
TTTTTTTTCATTAAAATATGATTCATTGTGAAAACGAAATGGTTAATACA
ATGTATTACAATCCTATGCGTATAAAAAGATACAGGCCACAAGCTCATAT
CAACAGAGAGGGGCTGCTTAAATATTTGAATTTCCCTTTATTTTGGCAAA
ACAATTAAAGAACAAACAAGGAATGCCTCGACACCGGTCGTTACTTATTG
TGGGACATCTGCTAAAGCTAAATCTTGAAATGCAGTCTTAATTCTACACA
TCTGTGATTTTGATGGTCTTCACAATGTATTTGGTGAGGGATCAGATCTA
GAAAGCTCAGCATACATATCCGCTATGGCTTTTGCAAAGTATTGCTTTGC
TTGTGGTCTCTTTATCTTAAATGTTGGAGTGAGCAGTCCATTTTCCACTG
TGAATGGCTCGAGCACCAAAGTCACAGCTTTTACAAATTCAAAGCCTCTC
AACTGAGCTTCTCTTCCTAGGGAATCCATATCAGCCAACACAGCAGCCCT
CGCTCTTGGGTCATTGCAAAGTTGCTCTAAGTTTTCATACTGAATGCCTT
CAGATGCAGCCCATGCTTTTAAAGCATCTTGGTCCACTGAGACAATGGCT
AC
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