DN618319

Overview
NameDN618319
Unique NameDN618319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618319 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 3.787e-70
Identity = 118/139 (84.89%), Postives = 128/139 (92.09%), Query Frame = -1
Query:  128 AKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 544
            AKGL +V C+YG PLLVVNGFLVLIT LQHTHP+LPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY+FD TPF KAMWREA+EC+YVEPD+  ++KGVFWY NK+
Sbjct:  245 AKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYRFDETPFVKAMWREARECIYVEPDQSTESKGVFWYNNKL 383          
BLAST of DN618319 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 3.545e-68
Identity = 114/137 (83.21%), Postives = 125/137 (91.24%), Query Frame = -1
Query:  131 KGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNK 541
            KGLV++ C+YG PLL+VNGFLV IT LQHTH +LPHY SSEWDW +GALAT+DRDYGILNKVFH+ITDTHVAHHLFSTMPHYHAMEAT AIKPILGEYYQFD TPFYKA+WREA+ECLYVEPDEG   KGV+WYRNK
Sbjct:  250 KGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFALPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQFDDTPFYKALWREARECLYVEPDEGTSEKGVYWYRNK 386          
BLAST of DN618319 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 3.545e-68
Identity = 115/140 (82.14%), Postives = 125/140 (89.29%), Query Frame = -1
Query:  128 AAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 547
            AA+G+  + C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAME TKAIKPILG+YYQFDGTP+ KAMWREAKEC+YVEPD   + KGVFWY NK+
Sbjct:  245 AAQGVASMVCLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQFDGTPWVKAMWREAKECIYVEPDRQGEKKGVFWYNNKL 384          
BLAST of DN618319 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.489e-66
Identity = 113/140 (80.71%), Postives = 125/140 (89.29%), Query Frame = -1
Query:  128 AAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 547
            AA+G+  + C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHY+AMEATKAIKPILG+YYQFDGTP+Y AM+REAKEC+YVEPD     KGV+WY NK+
Sbjct:  244 AAQGMASMICLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQFDGTPWYVAMYREAKECIYVEPDREGDKKGVYWYNNKL 383          
BLAST of DN618319 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 4.813e-49
Identity = 85/137 (62.04%), Postives = 106/137 (77.37%), Query Frame = -1
Query:  140 VAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWY 550
            VAAKG  +V CIYG P+L V  F  +IT L HTH SLPHY SSEW+W RGAL+T+DRD+G LN V H++T THV HHLFS +PHYHA EA  AI  +LG++Y+ D TP  KAMWREAKEC+++EP++G  +KGV+WY
Sbjct:  236 VAAKGAAWVTCIYGIPVLGVFIFFDIITYLHHTHLSLPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYKIDRTPILKAMWREAKECIFIEPEKGRGSKGVYWY 372          
BLAST of DN618319 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 3.135e-32
Identity = 70/125 (56.00%), Postives = 84/125 (67.20%), Query Frame = -1
Query:  164 LVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGD 535
            L+ V   Y  P L VN +LVLIT LQHT P LPHY    W++ RGAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D +P   A+WR  +EC +VE D GD
Sbjct:  271 LLTVTKYYIVPYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE-DHGD 394          
BLAST of DN618319 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.094e-32
Identity = 67/115 (58.26%), Postives = 80/115 (69.57%), Query Frame = -1
Query:  164 PLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGD 505
            P L VN +LVLIT LQHT P LPHY    W++ RGAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D +P   A+WR  +EC +VE D GD
Sbjct:  281 PYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE-DHGD 394          
BLAST of DN618319 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.660e-23
Identity = 61/135 (45.19%), Postives = 78/135 (57.78%), Query Frame = -1
Query:  164 AKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY----QFDGTPFY--KAMWREAKECLYVEPDEGD 544
            A G + +F IYG P L+   +L  +T L H      LP Y   EW + RG L TVDRDYG+ N + H+I  THV HHLF  +PHYH  EATKA KP+LG+YY    +    PF+  K + R  K+  YV  D G+
Sbjct:  229 AFGSLQMFKIYGAPYLIFVMWLDFVTYLHHHGYEKKLPWYRGKEWSYLRGGLTTVDRDYGLFNNIHHDI-GTHVIHHLFPQIPHYHLREATKAAKPVLGKYYREPKKSGPIPFHLVKDLTRSMKQDHYVS-DSGE 361          
BLAST of DN618319 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.489e-21
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  242 GLVYVFCIYGGPLLVVNGFLVLITLLQH---THPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 538
            G +++  +YG P L+   +L  +T L H   TH  LP Y   EW + RG L TVDRDYG +N V H+I  THV HHLF  +PHYH +EATK+ K +LG+YY+
Sbjct:  231 GPIFMLKLYGVPYLIFVMWLDFVTYLHHHGYTH-KLPWYRGQEWSYLRGGLTTVDRDYGWINNVHHDI-GTHVIHHLFPQIPHYHLVEATKSAKSVLGKYYR 330          
BLAST of DN618319 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.614e-20
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  242 GLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 538
            G + +  +YG P ++   +L L+T L H      LP Y   EW + RG L T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+A KP+ G+YY+
Sbjct:  305 GPIQLLKLYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVFGKYYR 404          
The following BLAST results are available for this feature:
BLAST of DN618319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FD6E2_SOYBN3.787e-7084.89Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN3.545e-6883.21Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU3.545e-6882.14Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH1.489e-6680.71Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL4.813e-4962.04Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORAP3.135e-3256.00Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD12_MORIS4.094e-3258.26Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD3E_TOBAC2.660e-2345.19Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_PHAAU2.489e-2149.02Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_SOYBN1.614e-2045.54Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618319 ID=DN618319; Name=DN618319; organism=Citrus sinensis; type=EST; length=550bp
CTATAATTAAAGTTCAATTAAAAGTAACAGAACAACCTCAATCACCACAA
AAGGGAAGCCAAATTACCGGACAAGAAACACAAAACTTCCCATATGGCAT
TTTTGCTACAACTTTTCCTCAAATTCAAATCTTATTTCTGTACCAGAAGA
CACCTTTGTTCTGGTCACCTTCGTCCGGTTCAACGTAAAGACACTCCTTT
GCTTCCCTCCACATTGCCTTATAAAATGGAGTCCCATCGAACTGATAATA
TTCTCCCAAAATTGGCTTTATTGCCTTCGTAGCCTCCATTGCATGATAAT
GTGGCATTGTTGAAAACAAATGGTGAGCTACATGAGTATCAGTAATGTTA
TGGAAGACCTTGTTCAAGATCCCATAGTCTCTATCAACAGTTGCTAGGGC
TCCTCGGAACCAGTCCCATTCTGAAGAATGGTAATGTGGCAGTGAAGGGT
GAGTGTGCTGCAACAATGTGATCAAAACGAGAAATCCGTTCACTACCAGC
AAAGGTCCTCCATAGATGCAGAACACGTACACAAGTCCTTTTGCTGCTAC
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