DN618309

Overview
NameDN618309
Unique NameDN618309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN618309 vs. ExPASy Swiss-Prot
Match: CERK1_MOUSE (Ceramide kinase OS=Mus musculus GN=Cerk PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 1 
Query:  409 FRFTVHSFQKSKIQPNLWVLAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGNGRKTWE-TVAPIFVRAKVNTKVIVTQRAGQAFDVM 708
            F FTVH  ++  ++ + W  A  TF   D   C +W+  +   L     RPK+LL+FI+P  GKG G++ +E TVAP+F  A + T++I+T+ A QA + +
Sbjct:   82 FAFTVHRVKR--VRHHRWKWARVTFWSADEQLCHLWLQTLRGLLESLTSRPKHLLVFINPFGGKGQGKRIYEKTVAPLFTLASITTEIIITEHANQAKETL 180
[Close]
BLAST of DN618309 vs. ExPASy Swiss-Prot
Match: CERK1_HUMAN (Ceramide kinase OS=Homo sapiens GN=CERK PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 36/101 (35.64%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:  409 FRFTVHSFQKSKIQPNLWVLAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGNGRKTWE-TVAPIFVRAKVNTKVIVTQRAGQAFDVM 708
            + FTVH  ++++   + W  A  TF   +   C +W+  +   L     RPK+LL+FI+P  GKG G++ +E  VAP+F  A + T +IVT+ A QA + +
Sbjct:   82 YAFTVHCVKRAR--RHRWKWAQVTFWCPEEQLCHLWLQTLREMLEKLTSRPKHLLVFINPFGGKGQGKRIYERKVAPLFTLASITTDIIVTEHANQAKETL 180
The following BLAST results are available for this feature:
BLAST of DN618309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CERK1_MOUSE3.003e-1437.62Ceramide kinase OS=Mus musculus GN=Cerk PE=2 SV=1[more]
CERK1_HUMAN2.811e-1235.64Ceramide kinase OS=Homo sapiens GN=CERK PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02G07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618309 ID=DN618309; Name=DN618309; organism=Citrus sinensis; type=EST; length=731bp
TTTGGATTTCAGCTGCGATTTTTATCAAAAAATTTCAGATTTTTCTGGAT
TATAATACTCTCAGATTAAATGGACAGAAACAGCGACGACGACGACGACG
GCAACGCCCTCCAAAACGCGTCGTTTAATGGAGAAGCGCCTCTTTTGAGC
TCGAATCTTTTCATGGATCAAGTTGGAGAAGTAGTTCTCACCCTTAATTC
AGATGGGTTGTCTTGGAACTCGCTTGATTCCCCCGAAAATGGTGGGGCTT
CTTGTTTAGGCATTAAACTTGAGAATGAAGTTCCAAATGAAGTCAAATTG
TCTGATGTCTATGCTGTAGAGTTAATAACTAAAGGTGCAATTTATAAATC
CAAACTTCCAAAGGCTGGAGCAGTTCTTTTGGGATTTGAGCCTTACGACT
CTGAGATGTTTCGCTTTACGGTGCATAGTTTTCAGAAATCAAAGATTCAG
CCAAATCTTTGGGTCTTGGCTGTGTACACCTTTGGTCACAAGGATTTGCC
AACATGTGAGATGTGGGTGAATCGAGTTAATGCTTTTCTGAACATGGAAG
TGGGAAGACCAAAGAATCTTTTGATTTTCATTCACCCAATGAGTGGGAAA
GGCAATGGCCGTAAAACCTGGGAAACTGTGGCTCCTATTTTTGTACGTGC
TAAAGTAAACACAAAGGTGATTGTGACTCAGAGGGCAGGACAGGCTTTTG
ATGTGATGGCATCCACTAAAAACAAGGAGCT
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