DN618300

Overview
NameDN618300
Unique NameDN618300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN618300 vs. ExPASy Swiss-Prot
Match: PSMF1_ARATH (Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 5.504e-47
Identity = 93/157 (59.24%), Postives = 120/157 (76.43%), Query Frame = 1 
Query:   55 MPNEKSVMAVIRAARPTFRNDFDKIAFVVHASFLASGHVLTATGPAADTEFTSPSSSTDEVGIDHWNELADDNYAFLFINPEKGSKKVLVKCLVMNSKLLVDALAEGASEPVHLEINVADYVAE-NGGNYSDKFKNLEKLVTDLDKDIISKLYGSPK 522
            M N ++VMA+IR ARP FRN+ DK+AF +H+SF+ASG++LTATG  A  +    SSS ++VGI+ WNE  +  YAF++ NP+KGSKK+LVKCL M+ KLLVDA+A+G +EP HLEI V DY  E N G+YS +FKNL+KLVTDL  +II KL G PK
Sbjct:    1 MANSQTVMAMIRLARPPFRNNHDKVAFAIHSSFVASGYILTATGRPAFADEALSSSSQNDVGIEGWNEF-EGEYAFVYANPKKGSKKILVKCLAMDDKLLVDAIADGGAEPAHLEIKVGDYAEESNEGDYSAQFKNLDKLVTDLQSEIIDKLDGKPK 156
The following BLAST results are available for this feature:
BLAST of DN618300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSMF1_ARATH5.504e-4759.24Probable proteasome inhibitor OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02G02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618300 ID=DN618300; Name=DN618300; organism=Citrus sinensis; type=EST; length=532bp
CCTCGCTCTCTCATAAACTCTAAAAACAAAGACAGGAAAAAAATTAAAAA
AAAAATGCCGAACGAGAAATCAGTGATGGCCGTGATAAGAGCGGCAAGAC
CTACCTTTCGAAACGACTTCGATAAAATTGCATTTGTCGTTCACGCCTCT
TTCCTTGCCAGTGGACACGTGTTAACCGCCACTGGACCTGCCGCGGACAC
CGAGTTCACCTCTCCCTCCTCCTCCACCGATGAAGTAGGAATTGATCACT
GGAACGAACTAGCTGATGATAATTACGCGTTTCTGTTTATAAACCCTGAG
AAAGGTTCAAAGAAAGTGTTGGTGAAGTGTCTCGTGATGAACAGTAAATT
GCTGGTTGATGCATTAGCTGAGGGAGCTTCGGAGCCTGTGCATCTCGAAA
TCAATGTTGCAGACTACGTTGCAGAAAATGGAGGCAATTACTCTGATAAG
TTCAAGAATTTAGAGAAGCTTGTGACAGATCTTGATAAAGACATTATTTC
AAAATTATACGGCTCCCCAAAAACAGCTAGCT
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