DN618299

Overview
NameDN618299
Unique NameDN618299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN618299 vs. ExPASy Swiss-Prot
Match: PSMF1_ARATH (Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.632e-23
Identity = 62/111 (55.86%), Postives = 64/111 (57.66%), Query Frame = -3 
Query:  256 VPPINPSRG-SDLFPGPGAGMYPRRGGFGGDGSMLXXXXXXXXXXXXXXXXXXXXXXXXXXXG----ARFDPYGPPGIPGFEPNRFVRN-PRGPDRTHPDLEFRPGGSDFI 570
            VPPI  + G SDLFPGPGAGMYP RGGFG DGSML                                ARFDPYGPPG+PGFEP RF R  PRGP   HPDLE  PGGSDFI
Sbjct:  193 VPPIPGNGGYSDLFPGPGAGMYPGRGGFG-DGSMLVGPTDPRFFPFGDGSDRPGFMGPPHPGMPPPGARFDPYGPPGVPGFEPGRFTRQPPRGPGGGHPDLEHFPGGSDFI 302
The following BLAST results are available for this feature:
BLAST of DN618299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSMF1_ARATH5.632e-2355.86Probable proteasome inhibitor OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02G02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618299 ID=DN618299; Name=DN618299; organism=Citrus sinensis; type=EST; length=608bp
TGCATTTACAGTCCTTGTACAGTCGTATGGTAACAAACTTTAAATAGCTA
TTTTTTGAGTTTACTACTTGGCATTTGGTCGGCAAAATACCTACCCGTCC
ATACAGAAACACCAAGAAACCAGAGTATACAAAATGCTATAACTCAAGCC
ACAATATAAACTGAAGATCTACACGGCTGGAATGAAATTCCCAGCCAAAA
CAGACAAGAACGAAAACAATTGAATGTGGATCAAACGCGTCCAGGAAGTC
TCTTAGATAAAATCAGAACCACCCGGGCGAAACTCCAGGTCTGGATGAGT
CCGATCAGGCCCTCGTGGGTTTCTGACAAAACGATTAGGTTCAAATCCAG
GAATTCCAGGCGGGCCGTAGGGATCAAAACGAGCACCTGGAGGAACAGGC
GGGTTCCCTCCAGGAAAACTAGGGTCTCCACCAATTCCACCAAAAAAGCC
AGGATGATCAGGTCCTATTAGCATGCTCCCATCACCGCCAAAGCCACCCC
TTCTAGGATACATTCCAGCACCAGGGCCAGGAAAAAGATCGCTACCACGA
CTTGGGTTGATAGGAGGAACAGAATTCCTGTAACATAAGATTGAGGCCCG
TCATGCTC
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