DN618297

Overview
NameDN618297
Unique NameDN618297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.333e-15
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = -1
Query:  187 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTM 498
            ++   + +EF++ + K K+     I  FTA+WCGPC+FI PV  E + K P     K+D+D+  L+    K N+ A+PTFLF + G +  ++VGA    L+ T+
Sbjct:    8 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDE--LKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTI 109          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.333e-15
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = -1
Query:  187 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTM 498
            ++   + +EF++ + K K+     I  FTA+WCGPC+FI PV  E + K P     K+D+D+  L+    K N+ A+PTFLF + G +  ++VGA    L+ T+
Sbjct:    8 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDE--LKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTI 109          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.615e-15
Identity = 34/97 (35.05%), Postives = 57/97 (58.76%), Query Frame = -1
Query:  214 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA 504
            + ++   + +E+N    K KD     +  FTA+WCGPC+ I P + EL+ K PHV  +K+D+D   L+    +  + A+P+F+  + G++V  IVGA
Sbjct:    5 AQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDD--LKDVAEEYKVEAMPSFVILKEGQEVERIVGA 99          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.474e-14
Identity = 35/97 (36.08%), Postives = 62/97 (63.92%), Query Frame = -1
Query:  187 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTM 477
            EE+N    K  +     +  FTA+WCGPC+FI P++ +++ K PHV   K+D+D+  L++  ++ ++ A+PTF+F + G++V  +VGA    L+ T+
Sbjct:   21 EEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDE--LKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTI 115          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.600e-14
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = -1
Query:  187 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTM 498
            ++ + + + +N  L K  DD    +  FTA+WCGPCKFI     EL+ K P VT  K+D+D+  L+S  +   + A+PTF+F + G+ V ++VGA    L+ T+
Sbjct:    7 VIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDE--LKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTI 108          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.314e-14
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = -1
Query:  187 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTM 498
            ++   + E +N  L K  +     +  FTA+WCGPC+FI P   +L+ K P+V   K+D D+  L+S  S   I A+PTF+F + G+ + ++VGA    L++T+
Sbjct:    8 VIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDE--LKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 109          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.629e-13
Identity = 36/97 (37.11%), Postives = 60/97 (61.86%), Query Frame = -1
Query:  187 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTM 477
            E +N  L K  D     +  FTA+WCGPC+FI P + EL+ K P+VT  K+D+D+  L++   +  + ++PTF+F + G+ + ++VGA    L+ T+
Sbjct:   15 EAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDE--LKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTI 109          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 2.779e-13
Identity = 36/97 (37.11%), Postives = 63/97 (64.95%), Query Frame = -1
Query:  196 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLK 486
            ++  EF+S++ +   D L  + ++ A WCGPCK I P+I + S ++P    YK+D+D+ G      K  +SA+PT L F++G++VA++VGA+ + +K
Sbjct:    6 KTASEFDSAIAQ---DKLVVVDFY-ATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG--DVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIK 96          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.191e-13
Identity = 32/95 (33.68%), Postives = 59/95 (62.11%), Query Frame = -1
Query:  214 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA 498
            ++   + E++N+ L   K+ +   +  FTA WC PC+FI P+  EL+ KH  V  +K+D+D+  L +   + ++ A+PTF++ +  EK+ ++VGA
Sbjct:   13 VIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDE--LATVAKEFDVQAMPTFVYMKGEEKLDKVVGA 105          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.191e-13
Identity = 32/95 (33.68%), Postives = 59/95 (62.11%), Query Frame = -1
Query:  214 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA 498
            ++   + E++N+ L   K+ +   +  FTA WC PC+FI P+  EL+ KH  V  +K+D+D+  L +   + ++ A+PTF++ +  EK+ ++VGA
Sbjct:   13 VIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDE--LATVAQEFDVQAMPTFVYMKGEEKLDKVVGA 105          
The following BLAST results are available for this feature:
BLAST of DN618297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
TRXH_ORYSJ1.333e-1536.54Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI1.333e-1536.54Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_FAGES6.615e-1535.05Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH1_TOBAC1.474e-1436.08Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH2_TOBAC5.600e-1437.50Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_ARATH7.314e-1435.58Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_RICCO1.629e-1337.11Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRX1_YEAST2.779e-1337.11Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
TRXH_BRARA6.191e-1333.68Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH_BRAOL6.191e-1333.68Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618297 ID=DN618297; Name=DN618297; organism=Citrus sinensis; type=EST; length=513bp
AAGGGCTTTTCAATAATATTACAAAAACAACGTCAACTATGAAAAATGCA
GGCTGGACAGGGTTCGTCTTGAAGAGCTAATGTTTGTTGTAAGGCCAGCA
AGGAGCCCAACAGCCCCAATCTTTCTTCAGCAAGCTCATCTGATCAGGTA
TCCTTACTTCATTCAATCCTTCTTGTAAAGTTGTTCCATAGTTGTCTTCA
ACCGTGAGACATCAGCACCAACTATTTCAGCCACCTTTTCTCCATGTTGA
AAGAACAAGAATGTTGGCACAGCACTGATGTTTAACTTGCTTAATGTGCT
TTCAAGTCCTTTCTGGTCAATGTCAATCTTATATGTTGTTACATGAGGGT
GTTTTGCACTCAACTCCCCTATGACAGGCCATATAAACTTGCAGGGGCCA
CACCAAGCAGCAGTGAAATAAAATATCGCTGGCAGAGAATCATCTTTAAC
TTTGCCAAGTGAGCTATTGAACTCTTCCCCTGACTCGATGACTAGAATAT
TTGATGGACCATC
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