DN618293

Overview
NameDN618293
Unique NameDN618293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618293 vs. ExPASy Swiss-Prot
Match: CRTZ_ESCVU (Beta-carotene hydroxylase OS=Escherichia vulneris GN=crtZ PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.895e-18
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  308 HASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS 607
            H   W  HESHH PR+G FELND+FA++ A  AIAL++ G    G+ P    G G+  TV+G+ Y  VHDGLVH+R+P   I    Y +R+  AH+LHH+
Sbjct:   28 HGWGWRWHESHHTPRKGVFELNDLFAVVFAGVAIALIAVGT--AGVWPLQWIGCGM--TVYGLLYFLVHDGLVHQRWPFHWIPRRGYLKRLYVAHRLHHA 123          
BLAST of DN618293 vs. ExPASy Swiss-Prot
Match: CRTZ_PANAN (Beta-carotene hydroxylase OS=Pantoea ananas GN=crtZ PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.162e-16
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  308 HASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS 607
            H   W  H SHH PR+G FE+ND++A++ A  +I L+  G    G+ P    GAG+  T +G+ Y  VHDGLVH+R+P   I    Y +R+  AH++HH+
Sbjct:   30 HGWGWGWHLSHHEPRKGAFEVNDLYAVVFAALSILLIYLG--STGMWPLQWIGAGM--TAYGLLYFMVHDGLVHQRWPFRYIPRKGYLKRLYMAHRMHHA 125          
BLAST of DN618293 vs. ExPASy Swiss-Prot
Match: CRTZ_PARS1 (Beta-carotene hydroxylase OS=Paracoccus sp. (strain PC1) GN=crtZ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.241e-14
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  281 WHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS--DKFHGVPYG 595
            W  H+SHH   +   E ND++ ++ AV A  L + G +   ++    +   LG+TV+G+ Y  +HDGLVH+R+P   I    YFRR+  AH+LHH+   + H V +G
Sbjct:   32 WGWHKSHHEEHDHALEKNDLYGVVFAVLATILFTVGAYWWPVL----WWIALGMTVYGLIYFILHDGLVHQRWPFRYIPRRGYFRRLYQAHRLHHAVEGRDHCVSFG 134          
BLAST of DN618293 vs. ExPASy Swiss-Prot
Match: CRTZ_PARSN (Beta-carotene hydroxylase OS=Paracoccus sp. (strain N81106 / MBIC 01143) GN=crtZ PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = -1
Query:  281 WHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS--DKFHGVPYG 595
            W  H+SHH   +   E ND++ ++ AV A  L + G+    ++    +   LG+TV+G+ Y  +HDGLVH+R+P   I    Y RR+  AH+LHH+   + H V +G
Sbjct:   32 WGWHKSHHEEHDHALEKNDLYGLVFAVIATVLFTVGWIWAPVL----WWIALGMTVYGLIYFVLHDGLVHQRWPFRYIPRKGYARRLYQAHRLHHAVEGRDHCVSFG 134          
The following BLAST results are available for this feature:
BLAST of DN618293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CRTZ_ESCVU1.895e-1848.00Beta-carotene hydroxylase OS=Escherichia vulneris ... [more]
CRTZ_PANAN5.162e-1642.00Beta-carotene hydroxylase OS=Pantoea ananas GN=crt... [more]
CRTZ_PARS18.241e-1437.38Beta-carotene hydroxylase OS=Paracoccus sp. (strai... [more]
CRTZ_PARSN4.090e-1336.45Beta-carotene hydroxylase OS=Paracoccus sp. (strai... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02F23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618293 ID=DN618293; Name=DN618293; organism=Citrus sinensis; type=EST; length=610bp
TTTATAATTAATATAGTCCCTTTTTGTTATCTTTCATTGACTATATATTA
TTTAACATCATAAACTTTACAACAGTAATCCACCCATAAGCATTCATAAT
TTATTTTTTTCATTAATAACACTATTGTTTCTGTACACTGACAAATTGAT
CCAAAAATTGGTCCTCCCATTAAATTGATTATTTTGGAACCCTGTTGTAT
GATTTGATTCTCTTACTGATCTCCTTCTCCAATTCTTCTAGTCCCCCCAC
TTCTTCAAGCTCCTTAGGTCCGAGAAAGAGCCCATATGGAACACCGTGGA
ATTTATCCGAGTGGTGAAGCTGGTGAGCCGCAGCGACTCTCCGGAAATAA
GGCACGTCGGCAATGGGACCCACAGGGAACCTTTTGTGAACGAGACCATC
GTGGACGAACATGTAGGCCATCCCAAACACCGTAATGCCAAGTCCAGCAC
CAAAACAGAGACCAGGTACAAGGCCTTTGTGGAAGAAGCCAAAAGAGAGA
AGGGCTATGGCTGGAACTGCGTTGATTATGGCAAACACATCGTTTAGCTC
AAAAGGACCCTCTCTTGGTCGATGGTGAGACTCGTGCATATGCCATAAAG
AAGCATGCCA
back to top