DN618288

Overview
NameDN618288
Unique NameDN618288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618288 vs. ExPASy Swiss-Prot
Match: S22A6_PONAB (Solute carrier family 22 member 6 OS=Pongo abelii GN=SLC22A6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  361 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFS 606
            S+ VT+W L C  +    L Q+L+  G ++GA VFG+L+D RLGR+  L +  +  AV G  TAF+PN+S Y   R+L+G S
Sbjct:  118 STIVTEWDLVCSHRALRQLAQSLYMVGVLLGAMVFGYLAD-RLGRRKVLILNYLQTAVSGTCTAFAPNFSIYCAFRLLSGMS 198          
BLAST of DN618288 vs. ExPASy Swiss-Prot
Match: S22A6_RAT (Solute carrier family 22 member 6 OS=Rattus norvegicus GN=Slc22a6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  361 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFS 606
            S+ VT+W L C  +    L Q+L+  G ++GA VFG+L+D RLGR+  L +  +  AV G   A++PNY+ Y V R+L+G S
Sbjct:  118 STIVTEWNLVCSHRAFRQLAQSLYMVGVLLGAMVFGYLAD-RLGRRKVLILNYLQTAVSGTCAAYAPNYTVYCVFRLLSGMS 198          
BLAST of DN618288 vs. ExPASy Swiss-Prot
Match: S22A6_MOUSE (Solute carrier family 22 member 6 OS=Mus musculus GN=Slc22a6 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  361 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFS 606
            S+ VT+W L C  +    L Q+LF  G ++GA +FG+L+D RLGR+  L +  +  AV G   A++PNY+ Y + R+L+G S
Sbjct:  112 STIVTEWNLVCSHRAFRQLAQSLFMVGVLLGAMMFGYLAD-RLGRRKVLILNYLQTAVSGTCAAYAPNYTVYCIFRLLSGMS 192          
BLAST of DN618288 vs. ExPASy Swiss-Prot
Match: S22A6_RABIT (Solute carrier family 22 member 6 OS=Oryctolagus cuniculus GN=SLC22A6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 1
Query:  361 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFS 606
            S+ VT+W L C  +    L Q+L+  G +IGA VFG+L+D RLGR+  L +  +  AV G   AFSPN++ Y   R+L+G S
Sbjct:  118 STIVTEWDLVCSHRALRQLGQSLYMAGVLIGAMVFGYLAD-RLGRRKVLILNYLQTAVSGTCAAFSPNFTVYCTFRLLSGMS 198          
The following BLAST results are available for this feature:
BLAST of DN618288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
S22A6_PONAB7.630e-1243.90Solute carrier family 22 member 6 OS=Pongo abelii ... [more]
S22A6_RAT1.301e-1142.68Solute carrier family 22 member 6 OS=Rattus norveg... [more]
S22A6_MOUSE1.700e-1141.46Solute carrier family 22 member 6 OS=Mus musculus ... [more]
S22A6_RABIT3.787e-1143.90Solute carrier family 22 member 6 OS=Oryctolagus c... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02F20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618288 ID=DN618288; Name=DN618288; organism=Citrus sinensis; type=EST; length=608bp
GGAAAATATACAACTGCGAAATTAATGAACATGGGGATATCCACGTCATC
TTCAGATCCCGGCAACGGCGAGTCCCTCCGGTCACCTCTCCTATCCCCGC
CAAAACAACCGCCTGCCGAGCAGGAGAAGCTCCTCGTCGACGACATGCTA
CACAAATACTGCGGCGAGTTCGGGCCGTGGCAGCTGCGTCATTTCGTGCT
TACAAGCCTTGCGTGGGCGCTCGAGGCGTTCCACACGATGGTCATGATCT
TTGCCGACCGGGAACCGGAATACAACTGCCTCGGACAGGGGTGTGACCCC
GGGGAGAAAACTGTCTGTGGGCTCGAACCGGGTTCGTGGGCTTGGACAGG
CGGGGACGGCAGCTCGACGGTGACTCAGTGGGGCCTCTTTTGTGAAGAAA
AGTATAAGGTTGGACTCGTCCAGGCATTGTTCTTTTTTGGCTGCATGATT
GGTGCGGGAGTATTTGGCCATCTCTCAGACTCCAGGCTAGGAAGAAAAGG
TTCTTTAACAGTAGTCTGCATGATGAATGCTGTTTTTGGTTGCTTAACAG
CATTCTCACCAAACTACTCAACCTATGTCGTACTTCGCATGCTTACTGGC
TTTAGCAC
back to top