DN618287

Overview
NameDN618287
Unique NameDN618287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618287 vs. ExPASy Swiss-Prot
Match: GP107_MOUSE (Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.260e-38
Identity = 80/179 (44.69%), Postives = 111/179 (62.01%), Query Frame = 3
Query:    9 YLSAGLTQLPSLFFFFSVLYIGFFGIWIYICLTNKRSVHRIHLVMGILLIMKALNLICAAEDKHYVKVTGTP-HGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEREKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKT 542
            YLSAG   LP L+   ++ +     IWI+I    +  V +IH +M  L   K+L+L+  A D HY+   G P  GW V++YI   ++  LLF  I LIGTGW+F+K  L +++KK+ MIVIPLQVLANVA ++I  T     ++  W     LVD++CC AI+FP+VWSIR L+E S T
Sbjct:  253 YLSAGEIPLPKLYVSMALFFFLSGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFPVVWSIRHLQEASAT 431          
BLAST of DN618287 vs. ExPASy Swiss-Prot
Match: GP107_HUMAN (Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.645e-38
Identity = 80/179 (44.69%), Postives = 110/179 (61.45%), Query Frame = 3
Query:    9 YLSAGLTQLPSLFFFFSVLYIGFFGIWIYICLTNKRSVHRIHLVMGILLIMKALNLICAAEDKHYVKVTGTP-HGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEREKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKT 542
            YLSAG   LP L+   +  +     IWI+I    +  V +IH +M  L   K+L+L+  A D HY+   G P  GW V++YI   ++  LLF  I LIGTGW+F+K  L +++KK+ MIVIPLQVLANVA ++I  T     ++  W     LVD++CC AI+FP+VWSIR L+E S T
Sbjct:  254 YLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFPVVWSIRHLQEASAT 432          
BLAST of DN618287 vs. ExPASy Swiss-Prot
Match: GP108_HUMAN (Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 6.056e-33
Identity = 72/179 (40.22%), Postives = 108/179 (60.34%), Query Frame = 3
Query:    9 YLSAGLTQLPSLFFFFSVLYIGFFGIWIYICLTNKRSVHRIHLVMGILLIMKALNLICAAEDKHYVKVTGTP-HGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEREKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKT 542
            +LSA    L  L+   S  ++     W+ I   N  SV +IH +M  L   K+++L+  + + +++   G P  G  V++YI   ++  LLF  I LIG+GW+F+K  L ++EKKV  IVIP+QVLANVA ++I        D+V W ++  LVD+ICC AI+FP+VWSIR L++ S T
Sbjct:  252 FLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALAFTKSISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSDKEKKVFGIVIPMQVLANVAYIIIESREEGASDYVLWKEILFLVDLICCGAILFPVVWSIRHLQDASGT 430          
BLAST of DN618287 vs. ExPASy Swiss-Prot
Match: GP108_RAT (Protein GPR108 OS=Rattus norvegicus GN=Gpr108 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.745e-32
Identity = 71/179 (39.66%), Postives = 106/179 (59.22%), Query Frame = 3
Query:    9 YLSAGLTQLPSLFFFFSVLYIGFFGIWIYICLTNKRSVHRIHLVMGILLIMKALNLICAAEDKHYVKVTGTP-HGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEREKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKT 542
            +LSA    L  L+   S  ++     W+ +   N  SV +IH +M  L   K+++L+  + + +++   G P  G  V+ YI   ++  LLF  I LIG+GW+F+K  L ++EKK+  IVIPLQVLANVA +VI        D+  W ++  LVD+ICC AI+FP+VWSIR L++ S T
Sbjct:  285 FLSAAEIPLFKLYLIMSACFLAAGIFWVSVLCKNTYSVFKIHWLMAALAFTKSVSLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWAFVKYMLSDKEKKIFGIVIPLQVLANVAYIVIESREEGASDYGLWKEILFLVDLICCGAILFPVVWSIRHLQDASGT 463          
BLAST of DN618287 vs. ExPASy Swiss-Prot
Match: GP108_MOUSE (Protein GPR108 OS=Mus musculus GN=Gpr108 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.745e-32
Identity = 71/179 (39.66%), Postives = 106/179 (59.22%), Query Frame = 3
Query:    9 YLSAGLTQLPSLFFFFSVLYIGFFGIWIYICLTNKRSVHRIHLVMGILLIMKALNLICAAEDKHYVKVTGTP-HGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEREKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKT 542
            +LSA    L  L+   S  ++     W+ +   N  SV +IH +M  L   K+++L+  + + +++   G P  G  V+ YI   ++  LLF  I LIG+GW+F+K  L ++EKK+  IVIPLQVLANVA +VI        D+  W ++  LVD+ICC AI+FP+VWSIR L++ S T
Sbjct:  278 FLSAAEIPLFKLYLIMSACFLAADIFWVSVLCKNTYSVFKIHWLMAALAFTKSVSLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWAFVKYMLSDKEKKIFGIVIPLQVLANVAYIVIESREEGASDYGLWKEILFLVDLICCGAILFPVVWSIRHLQDASGT 456          
BLAST of DN618287 vs. ExPASy Swiss-Prot
Match: GP108_BOVIN (Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.142e-31
Identity = 71/179 (39.66%), Postives = 106/179 (59.22%), Query Frame = 3
Query:    9 YLSAGLTQLPSLFFFFSVLYIGFFGIWIYICLTNKRSVHRIHLVMGILLIMKALNLICAAEDKHYVKVTGTP-HGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEREKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKT 542
            YLSA    L  L+   S  ++G    W+ I   N  +V +IH +M  L   K+++L+  + + +++   G P  G  V+ YI   ++  LLF  I LIG+GW+F+K  L ++EKK+  IVIPLQVLANVA +V+        D+  W ++  LVD+ICC  I+FP+VWSIR L++ S T
Sbjct:  257 YLSAAEIPLFKLYMVMSACFLGAGIFWVSILCKNTYNVFKIHWLMAALTFTKSVSLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWAFVKYVLSDKEKKIFGIVIPLQVLANVAYIVMESREEGASDYGIWKEILFLVDLICCGTILFPVVWSIRHLQDASGT 435          
The following BLAST results are available for this feature:
BLAST of DN618287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GP107_MOUSE1.260e-3844.69Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2[more]
GP107_HUMAN1.645e-3844.69Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1[more]
GP108_HUMAN6.056e-3340.22Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=2[more]
GP108_RAT8.745e-3239.66Protein GPR108 OS=Rattus norvegicus GN=Gpr108 PE=2... [more]
GP108_MOUSE8.745e-3239.66Protein GPR108 OS=Mus musculus GN=Gpr108 PE=2 SV=1[more]
GP108_BOVIN1.142e-3139.66Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02F19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618287 ID=DN618287; Name=DN618287; organism=Citrus sinensis; type=EST; length=544bp
CGCGGGATTACCTCTCCGCTGGTCTGACTCAGTTACCTTCGTTGTTTTTC
TTCTTCTCGGTTTTGTACATCGGCTTTTTCGGAATCTGGATCTACATTTG
CTTGACGAATAAGCGATCCGTTCATCGGATTCATTTGGTGATGGGGATTT
TGCTCATAATGAAAGCTTTGAACTTGATTTGCGCTGCCGAGGATAAGCAT
TACGTGAAAGTCACGGGGACGCCGCACGGATGGGACGTGTTGTTTTACAT
ATTCCAGTTTATTCGTGTCGTTTTGCTCTTCACGGTGATCGTTTTGATCG
GGACGGGGTGGTCGTTTTTAAAGCCGTTTTTGCAAGAGAGGGAGAAGAAG
GTGTTGATGATTGTGATTCCGTTACAGGTTCTGGCCAACGTGGCATCGGT
TGTGATTGGTGAAACTGGGCCGTTTATTAAGGATTGGGTGACTTGGAATC
AGGTGTTTTTGTTGGTGGATATTATCTGCTGTTGTGCGATTATTTTCCCG
ATCGTGTGGTCGATTCGGTCTTTGAGAGAGACGTCAAAGACTGA
back to top