DN618286

Overview
NameDN618286
Unique NameDN618286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618286 vs. ExPASy Swiss-Prot
Match: GP107_MOUSE (Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 5.902e-21
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = -2
Query:  229 IVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEELASLAFYIVIFYMFRPLETNEYFVL 501
            +VWSIR L+E S TDGKAA NLAKL LFR +Y++++ Y+YFTRI+ F LK    ++++W+    +E A+L F+++  Y FRP   N Y  L
Sbjct:  418 VVWSIRHLQEASATDGKAAINLAKLRLFRHYYVLIVCYIYFTRIIAFLLKFAVPFQWKWLYQLLDETATLVFFVLTGYKFRPASDNPYLQL 508          
BLAST of DN618286 vs. ExPASy Swiss-Prot
Match: GP108_BOVIN (Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.239e-19
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = -2
Query:  229 IVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEELASLAFYIVIFYMFRPLETNEYFVL 501
            +VWSIR L++ S TDGK A NLAKL LFR +Y++VI Y+YFTRI+   L+ +  +++QW+     E ++LAF+++  Y F+P   N Y  L
Sbjct:  422 VVWSIRHLQDASGTDGKVAVNLAKLKLFRHYYVMVICYIYFTRIIAILLRAVVPFQWQWLYQLLVEGSTLAFFVLTGYKFQPARDNPYLQL 512          
BLAST of DN618286 vs. ExPASy Swiss-Prot
Match: GP108_RAT (Protein GPR108 OS=Rattus norvegicus GN=Gpr108 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.524e-19
Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = -2
Query:  229 IVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEELASLAFYIVIFYMFRPLETNEYFVL 501
            +VWSIR L++ S TDGK A NLAKL LFR +Y++VI Y+YFTRI+   L+    +++QW+     E ++LAF+++  Y F+P   N Y  L
Sbjct:  450 VVWSIRHLQDASGTDGKVAMNLAKLKLFRHYYVMVICYIYFTRIIAILLRVAVPFQWQWLYQLLVESSTLAFFVLTGYKFQPAGDNPYLQL 540          
BLAST of DN618286 vs. ExPASy Swiss-Prot
Match: GP108_HUMAN (Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.099e-18
Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = -2
Query:  229 IVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEELASLAFYIVIFYMFRPLETNEYFVL 501
            +VWSIR L++ S TDGK A NLAKL LFR +Y++VI Y+YFTRI+   L+    +++QW+     E ++LAF+++  Y F+P   N Y  L
Sbjct:  417 VVWSIRHLQDASGTDGKVAVNLAKLKLFRHYYVMVICYVYFTRIIAILLQVAVPFQWQWLYQLLVEGSTLAFFVLTGYKFQPTGNNPYLQL 507          
BLAST of DN618286 vs. ExPASy Swiss-Prot
Match: GP108_MOUSE (Protein GPR108 OS=Mus musculus GN=Gpr108 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.742e-18
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = -2
Query:  229 IVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEELASLAFYIVIFYMFRPLETNEYFVL 501
            +VWSIR L++ S TDGK A NLA+L LFR +Y++VI Y+YFTRI+   L+    +++QW+     E ++LAF+++  Y F+P   N Y  L
Sbjct:  443 VVWSIRHLQDASGTDGKVAVNLARLKLFRHYYVMVICYIYFTRIIAILLQVAVPFQWQWLYQLLVESSTLAFFVLTGYKFQPAGDNPYLQL 533          
BLAST of DN618286 vs. ExPASy Swiss-Prot
Match: GP107_HUMAN (Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.137e-14
Identity = 44/139 (31.65%), Postives = 63/139 (45.32%), Query Frame = -2
Query:  229 IVWSIRSLRETSKTDGK------------------------------------------------AARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEELASLAFYIVIFYMFRPLETNEYFVL 501
            +VWSIR L+E S TDGK                                                AA NLAKL LFR +Y++++ Y+YFTRI+ F LK    ++++W+    +E A+L F+++  Y FRP   N Y  L
Sbjct:  419 VVWSIRHLQEASATDGKGDSMGPLQQRANLRAGSRIESHHFAQADLELLASSCPPASVSQRAGITAAINLAKLKLFRHYYVLIVCYIYFTRIIAFLLKLAVPFQWKWLYQLLDETATLVFFVLTGYKFRPASDNPYLQL 557          
The following BLAST results are available for this feature:
BLAST of DN618286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GP107_MOUSE5.902e-2148.35Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2[more]
GP108_BOVIN3.239e-1946.15Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1[more]
GP108_RAT5.524e-1946.15Protein GPR108 OS=Rattus norvegicus GN=Gpr108 PE=2... [more]
GP108_HUMAN2.099e-1846.15Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=2[more]
GP108_MOUSE2.742e-1845.05Protein GPR108 OS=Mus musculus GN=Gpr108 PE=2 SV=1[more]
GP107_HUMAN3.137e-1431.65Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02F19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618286 ID=DN618286; Name=DN618286; organism=Citrus sinensis; type=EST; length=502bp
TTTTTTTTTTTTTTTTTCCATTAAAAGAGTACAGACACTATATTAAAGAT
AAGAGTGATTATAACATAAAAAAGTAAATACCCAAAAAGAAAAAATCACG
GGGCATCAACAGCAGACCTAATGCTATCAGCTGTCACCCTTGCAAAGTAT
TGTCACAGTTTGTCAAATTCAAAGCTCAAACTCTTCATCCCTGAGAGCCT
GCTCCGCAGCCTCCTCTTCCTCCTCATCAAGAACAAAATACTCATTGGTC
TCCAGAGGCCTAAACATATAGAAAATCACAATATAAAATGCCAAACTCGC
CAGCTCTTCAGCTGCATTGCTCACCCACTGGTACTTATAAGCAGCGATGG
TCTTAAGCGCAAACACCACAATTCGCGTGAAGTACAAGTAACCAATCACA
ACAATGTAAAACTGCCTGAACAAAGTCAGCTTGGCCAAATTCCTTGCCGC
CTTCCCGTCAGTCTTTGACGTCTCTCTCAAAGACCGAATCGACCACACGA
TC
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