DN618278

Overview
NameDN618278
Unique NameDN618278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618278 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.010e-43
Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = -3
Query:  208 GGKMLDAVLLNMRIHGRIAVCGMISQYNLEKPEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVVAPE 543
            GGKMLDAVLLNM  HGRIAVCGMISQYNLE  EGVHNL  ++ KRIR++GF+  DFY +YPKFLELV+P IKEGK+ YVED+A+GLEKAP ALVG+F G+NVGKQ+VV+A E
Sbjct:  232 GGKMLDAVLLNMNPHGRIAVCGMISQYNLENQEGVHNLSNIIYKRIRIQGFVVADFYDKYPKFLELVLPRIKEGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVIARE 343          
BLAST of DN618278 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.244e-42
Identity = 80/112 (71.43%), Postives = 96/112 (85.71%), Query Frame = -3
Query:  208 GGKMLDAVLLNMRIHGRIAVCGMISQYNLEKPEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVVAPE 543
            GGKMLDAVL+NM +HGRIAVCGMISQYNLE  EGVHNL  ++ KRIR++GF+  DFY +Y KFLE V+P I+EGK+ YVED+A+GLEKAP ALVG+F G+NVGKQ+VVVA E
Sbjct:  234 GGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRIRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVVARE 345          
BLAST of DN618278 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 49/113 (43.36%), Postives = 69/113 (61.06%), Query Frame = -3
Query:  208 GGKMLDAVLLNMRIHGRIAVCGMISQYNLEKPEGVHNLMQVVGKRIRMEGFLAGDFYHQY-PKFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVVAPE 543
            GG+ +DAVL NM + GRI  CG ISQYN   P  V NL  V+ K + ++GF+  +   QY  ++ E +   I EGK+ Y  D+ +GLE AP A +G+  G+N GK +V +A E
Sbjct:  237 GGETMDAVLENMNLQGRIIFCGAISQYNNPNPYRVKNLGMVLVKSLTIQGFIVANILPQYQEQYFEEMPKLIAEGKIKYKCDVYDGLESAPEAFIGMLQGKNSGKTIVKIADE 349          
BLAST of DN618278 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.520e-15
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = -3
Query:  214 GGKMLDAVLLNMRIHGRIAVCGMISQYNL-EKPEGVHNL----MQVVGKRIRMEGFL-AGDFYHQYPKFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVVA 543
            GGK+ DAVL  +    RI VCG++S YN  E P G   L      V+ KRIR++GF+ A D+ H+  +F   +   +KE K+ Y E+I +GLE AP   +G+  G+N GK ++ VA
Sbjct:  227 GGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIHEFQREMGQWVKEDKIHYREEITDGLENAPQTFIGLLKGKNFGKVVIRVA 342          
BLAST of DN618278 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.858e-13
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = -3
Query:  223 GGKMLDAVLLNMRIHGRIAVCGMISQYNLEKPEGVHNLMQVV-GKRIRMEGFLAGDFYHQY-PKFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLV 543
            GG+  +AV+L M+  GRIA+CG ISQYN   P       +VV  +++RMEGF+   +  +   K L  +M  + EGK+   E + EG EK P+A +G+  G+N+GK +V
Sbjct:  219 GGEFSNAVILQMKTFGRIAICGAISQYNRTGPCPQGPAPEVVIYQQLRMEGFIVNRWQGEVRQKALTELMNWVSEGKVQCHEYVTEGFEKMPAAFMGMLKGENLGKTIV 327          
BLAST of DN618278 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.427e-13
Identity = 44/109 (40.37%), Postives = 65/109 (59.63%), Query Frame = -3
Query:  223 GGKMLDAVLLNMRIHGRIAVCGMISQYNLEKPEGVHNLMQVV-GKRIRMEGFLAGDFYHQY-PKFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLV 543
            GG+  + V+L M+  GRIA+CG ISQYN   P       +V+  +++RMEGF+   +  +   K L  +M  + EGK+ Y E I EG EK P+A +G+  G N+GK +V
Sbjct:  219 GGEFSNTVILQMKTFGRIAICGAISQYNRTGPCPPGPSPEVIIYQQLRMEGFIVTRWQGEVRQKALTDLMNWVSEGKIRYHEYITEGFEKMPAAFMGMLKGDNLGKTIV 327          
BLAST of DN618278 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.170e-13
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = -3
Query:  214 GGKMLDAVLLNMRIHGRIAVCGMISQYNLEKPE---GVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVVA 543
            GG + DAV+  +    RI VCG IS YN E      G     +++  +  M+GF+  D+  ++ +  + +   +K GKL Y E I EG E  P A +G+F G+N GKQL+ V+
Sbjct:  224 GGPISDAVMNLLNEFARIPVCGAISSYNAESEADDMGPRVQSKLIKTKSLMQGFIVSDYSDRFSEGAKQLAEWLKAGKLHYEETITEGFENIPDAFLGLFKGENKGKQLIKVS 336          
The following BLAST results are available for this feature:
BLAST of DN618278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
P2_ARATH1.010e-4374.11Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH4.244e-4271.43Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YKM8_SCHPO5.048e-1943.36Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
YNCB_ECOLI1.520e-1541.38Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
PTGR1_MOUSE1.858e-1340.37Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_RAT2.427e-1340.37Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]
YFMJ_BACSU3.170e-1336.28Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02F15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618278 ID=DN618278; Name=DN618278; organism=Citrus sinensis; type=EST; length=545bp
TTTTTTTTTTTTTGAAACACTAACATTTCAAAGCGTTCATTGATTTAGAA
ACCAGTACCATACACATGTTCTGAATCTTTCATTTATAGCTGAGTACAAC
TTGATCAAACAAACATAACATGTATCAAAAATAAGACAGAGGCATCTTCA
CTAAGCTTTTAAAGTGCATGGCACAGTCCACTTTTAAAGCATATTGTAAT
CATATCATTCAGGAGCAACTACAACCAGTTGTTTTCCAACATTCTGCCCA
GTGAATATCCCAACTAGGGCTGATGGAGCTTTCTCCAGGCCTTCAGCTAT
GTCCTCGACATATACTAACTTTCCTTCTTTGATTGCCGGCATAACCAGTT
CCAAGAATTTCGGATATTGGTGGTAGAAATCACCGGCAAGAAACCCTTCC
ATGCGAATTCGTTTTCCAACTACTTGCATCAAGTTGTGTACGCCTTCAGG
CTTCTCAAGGTTGTACTGTGAGATCATTCCGCATACGGCGATGCGGCCAT
GAATTCTCATGTTGAGTAGGACTGCATCAAGCATCTTACCCCCAA
back to top