DN618270

Overview
NameDN618270
Unique NameDN618270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618270 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 3.846e-72
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = -2
Query:  205 PDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNAYTADKDSPLTRTTAEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPLEDKDMAFTASPGTKG 606
            PDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAR+HIKDMMRQMWKKVNAYTADKDSPLT TT EFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPLEDK MAFTASPGTKG
Sbjct:  473 PDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVARQHIKDMMRQMWKKVNAYTADKDSPLTGTTTEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPLEDKHMAFTASPGTKG 606          
BLAST of DN618270 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.747e-32
Identity = 70/119 (58.82%), Postives = 87/119 (73.11%), Query Frame = -2
Query:  250 PDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNAYTADKDSPLTRTTAEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPL 606
            P+I+ WSS I RL DDLGTS+DE++RGDVPK+IQCYM+ETGASEE ARE+IK ++   WKK+N   A   SP +    E  LNL RM+  +Y HGDGHG+ N+ET D   +LL QPIPL
Sbjct:  477 PNIIRWSSIIARLADDLGTSTDELKRGDVPKAIQCYMNETGASEEGAREYIKYLISATWKKMNKDRA-ASSPFSHIFIEIALNLARMAQCLYQHGDGHGLGNRETKDRILSLLIQPIPL 594          
BLAST of DN618270 vs. ExPASy Swiss-Prot
Match: SSS_SALOF ((+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.443e-26
Identity = 58/115 (50.43%), Postives = 75/115 (65.22%), Query Frame = -2
Query:  259 DIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNAYTADKDSPLTRTTAEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQP 603
            +I++ S  I RL DDLGTS  E++RGDVPK+IQCYM++T ASE  A EH+K ++R+ WK++N  T   D P T        NL R + F+YL GDGHGVQ+ E       LLFQP
Sbjct:  474 NILYLSGTILRLADDLGTSQHELERGDVPKAIQCYMNDTNASEREAVEHVKFLIREAWKEMNTVTTASDCPFTDDLVAAAANLARAAQFIYLDGDGHGVQHSEIHQQMGGLLFQP 588          
BLAST of DN618270 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.191e-26
Identity = 59/119 (49.58%), Postives = 80/119 (67.23%), Query Frame = -2
Query:  250 PDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNAYTADKDSPLTRTTAEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPL 606
            P+IV  +S I RL DDLGT SDE++RGDVPKSIQCYMH+TGASE+ AREHIK ++ + WK++N    + +S  +    +   NL R S F+Y +GDGH  QN  + +    L+  PIP+
Sbjct:  504 PNIVRHASIILRLADDLGTLSDELKRGDVPKSIQCYMHDTGASEDEAREHIKYLISESWKEMNNEDGNINSFFSNEFVQVCQNLGRASQFIYQYGDGHASQNNLSKERVLGLIITPIPM 622          
BLAST of DN618270 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.701e-25
Identity = 62/123 (50.41%), Postives = 81/123 (65.85%), Query Frame = -2
Query:  247 DIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVN--AYTADKDSP-LTRTTAEFLLNLVRMSHFMYLHGDGHGVQNQ-ETIDVGFTLLFQPIPLE 603
            D+V  S+ + RL +DL TS DE+ RGDV KS+QCYMHETG SEE AR H++ M+   W ++N  A TA + S  L+R   E  +NL RMS  MY HGDGHG  ++ + +D   TLL  PIPL+
Sbjct:  476 DVVRCSATVLRLANDLATSPDELARGDVLKSVQCYMHETGVSEEEARTHVQQMISHTWDEMNYEARTAARSSSLLSRRFVETAMNLARMSQCMYQHGDGHGCPDKAKIVDRVQTLLVDPIPLD 598          
BLAST of DN618270 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.017e-25
Identity = 62/121 (51.24%), Postives = 79/121 (65.29%), Query Frame = -2
Query:  247 IVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNA--YTADKDSPLTRTTAEFLLNLVRMSHFMYLHGDGHGV-QNQETIDVGFTLLFQPIPLE 600
            IV  S+ + RL +DLGTS  E+ RGDV KS+QCYMHETGASEE AR+H+  M+  MW  +N+   TA   S  +R   E  +NL RMS  MY +GDGHG  +  +TID   +LL  PIPL+
Sbjct:  475 IVRCSATVLRLANDLGTSPTELARGDVLKSVQCYMHETGASEERARDHVHQMISDMWDDMNSETKTACNSSSRSRGFKEAAMNLARMSQCMYQYGDGHGCPEKAKTIDRVQSLLVDPIPLD 595          
BLAST of DN618270 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.026e-24
Identity = 61/115 (53.04%), Postives = 79/115 (68.70%), Query Frame = -2
Query:  250 SKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNAYTADKDSPLTRTTAEFL---LNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPL 585
            S + RL DDLGT SDE++RGDVPKSIQCYMH+TGASE+ AREHIK ++ ++WK++N    D+D   +  + EF+    NL RMS FMY HGDGH  Q+  +      L+  PIPL
Sbjct:  505 SLMLRLADDLGTLSDEMKRGDVPKSIQCYMHDTGASEDEAREHIKFLISEIWKEMN----DEDEYNSIFSKEFVQACKNLGRMSLFMYQHGDGHASQDSHSRKRISDLIINPIPL 615          
BLAST of DN618270 vs. ExPASy Swiss-Prot
Match: MYRS1_ARATH (Myrcene/ocimene synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = -2
Query:  247 DIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVN-AYTADKDSPLTRTTAEFLLNLVRMSHFMYLHGDGHG-VQNQETIDVGFTLLFQPIPLE 603
            ++V  SS +FRL +DL TS DE+ RGDV KSIQCYM ETGASE+ AR H++ M+  +W ++N    A   S L     E ++NL RMS  MY +GDGHG  +  + +D   +LLF PIPL+
Sbjct:  471 NVVRCSSSVFRLANDLVTSPDELARGDVCKSIQCYMSETGASEDKARSHVRQMINDLWDEMNYEKMAHSSSILHHDFMETVINLARMSQCMYQYGDGHGSPEKAKIVDRVMSLLFNPIPLD 591          
BLAST of DN618270 vs. ExPASy Swiss-Prot
Match: BPPS_SALOF ((+)-bornyl diphosphate synthase, chloroplastic OS=Salvia officinalis PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.133e-22
Identity = 56/115 (48.70%), Postives = 73/115 (63.48%), Query Frame = -2
Query:  259 DIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNAYTADKDSPLTRTTAEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQP 603
            DI+  +  I RL DDLGTS  E+ RGDVPK+IQCYM ET ASEE A EH+K ++R+ WK +N   A    P          N+ R++ F+YLHGDG GVQ+ +T +    LLF+P
Sbjct:  483 DILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIA-AGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEP 596          
BLAST of DN618270 vs. ExPASy Swiss-Prot
Match: SCS_SALOF (1,8-cineole synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.298e-19
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = -2
Query:  301 DIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNAYTADKDSPLTRTTAEFLLNLVRMSHFMYLH-GDGHGVQN 603
            DIV  S  I RL DD+GTS DE++RGDVPKS+QCYM+E  ASEE AREH++ ++ Q WK +N       S  ++   +   NL RM+ ++Y H  DG G+Q+
Sbjct:  476 DIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEM--MTSSFSKYFVQVSANLARMAQWIYQHESDGFGMQH 575          
The following BLAST results are available for this feature:
BLAST of DN618270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RLC1_CITLI3.846e-7297.01(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
MYRS_QUEIL1.747e-3258.82Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
SSS_SALOF2.443e-2650.43(+)-sabinene synthase, chloroplastic OS=Salvia off... [more]
TPS1_CANSA3.191e-2649.58(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
MYRS2_ARATH2.701e-2550.41Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]
CINS_ARATH6.017e-2551.241,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]
TPS2_CANSA1.026e-2453.04(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
MYRS1_ARATH2.287e-2448.76Myrcene/ocimene synthase 1, chloroplastic OS=Arabi... [more]
BPPS_SALOF8.133e-2248.70(+)-bornyl diphosphate synthase, chloroplastic OS=... [more]
SCS_SALOF1.298e-1948.041,8-cineole synthase, chloroplastic OS=Salvia offi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02F11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618270 ID=DN618270; Name=DN618270; organism=Citrus sinensis; type=EST; length=607bp
ATTCTCAATAAAAGTAACATATATATATATATATATATATATATATATAT
CATTTCTTTTTCATTTATAAACCTTGATGAATGAGGGAATTTATTTTATT
ATCGAAAAGAGATCCCTCAGAAAAAAGAAAAGCGGAGGCCAACATCAACT
GAAACTGCACTCTCTGGGAATTCGCAACGCATCGTGCATTATAATTCATC
ATCAGCCTTTGGTGCCAGGAGATGCTGTGAAAGCCATGTCTTTGTCCTCC
AAGGGAATGGGCTGAAAAAGCAATGTAAAGCCGACATCGATAGTCTCTTG
GTTTTGAACACCATGCCCATCTCCATGTAGATACATAAAATGGGACATTC
GCACAAGATTCAAGAGGAACTCAGCAGTTGTTCGAGTCAAGGGAGAGTCT
TTATCGGCTGTGTATGCATTCACCTTCTTCCACATCTGTCTCATCATATC
CTTGATGTGTTCACGAGCAACTTCCTCCGAGGCACCAGTTTCATGCATGT
AACACTGGATTGATTTCGGAACATCCCCTCTCTGTATCTCGTCCGATGAA
GTTCCCAAATCATCTTGCAGACGGAAAATCTTGGATGACCAGTGAACTAT
ATCTGGA
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