DN618266

Overview
NameDN618266
Unique NameDN618266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618266 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.973e-37
Identity = 70/77 (90.91%), Postives = 75/77 (97.40%), Query Frame = -2
Query:  375 IYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP 605
            IYSVIPQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIV+VWSGL+AITISLLWVAINPPAG+ QIGGSF FP
Sbjct: 1069 IYSVIPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINPPAGSTQIGGSFTFP 1145          
BLAST of DN618266 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.575e-36
Identity = 67/77 (87.01%), Postives = 74/77 (96.10%), Query Frame = -2
Query:  375 IYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP 605
            IYSV+PQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIV+VWSGL+AITISLLWVAINPPAG  +IGG+F FP
Sbjct: 1069 IYSVVPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINPPAGNTEIGGNFSFP 1145          
BLAST of DN618266 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.719e-35
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = -2
Query:  375 IYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP 605
            IYS IPQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGL+AITISLLWVAINPP+  +QIGGSF FP
Sbjct: 1094 IYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINPPSQNSQIGGSFTFP 1170          
BLAST of DN618266 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.719e-35
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = -2
Query:  375 IYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP 605
            IYS IPQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGL+AITISLLWVAINPP+  +QIGGSF FP
Sbjct: 1094 IYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINPPSQNSQIGGSFTFP 1170          
BLAST of DN618266 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.937e-33
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = -2
Query:  375 IYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPA--GTNQIGGSFQFP 605
            IYS IPQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIV+VWSGL+AITISLLW+AI PP+    +Q+GGSF FP
Sbjct: 1049 IYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKPPSAQANSQLGGSFSFP 1127          
BLAST of DN618266 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 5.937e-33
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = -2
Query:  375 IYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPA--GTNQIGGSFQFP 605
            IYS IPQWS+L+GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIV+VWSGL+AITISLLW+AI PP+    +Q+GGSF FP
Sbjct: 1049 IYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKPPSAQANSQLGGSFSFP 1127          
BLAST of DN618266 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.704e-30
Identity = 61/82 (74.39%), Postives = 66/82 (80.49%), Query Frame = -2
Query:  375 IYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQI-----GGSFQFP 605
            IY  +PQWS+L+GG FFSFWVLAHLYPFAKGLMGRRG+TPTIVFVW+GLIAITISLLW AINP  G         GG FQFP
Sbjct: 1030 IYQAVPQWSKLIGGAFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWAGLIAITISLLWTAINPNTGPAAAAEGVGGGGFQFP 1111          
BLAST of DN618266 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.793e-29
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = -2
Query:  375 IYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQI--GGSFQFP 605
            +YS  PQWS+L+GG FFSFWVL HLYPFAKGL+GRRGR PTIVFVWSGLI++ ISLLWV INPPAG  +   GG F FP
Sbjct: 1137 LYSEFPQWSKLLGGAFFSFWVLCHLYPFAKGLLGRRGRVPTIVFVWSGLISMIISLLWVYINPPAGARERIGGGGFSFP 1215          
BLAST of DN618266 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.159e-28
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = -2
Query:  375 IYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP 605
            +YS  PQWS+LVGGVFFSFWVL HLYPFAKGLMGRRGR PTIVFVWSGL++I +SLLWV INPP+G  Q    FQFP
Sbjct: 1106 LYSPFPQWSKLVGGVFFSFWVLCHLYPFAKGLMGRRGRVPTIVFVWSGLLSIIVSLLWVYINPPSG-KQDYMQFQFP 1181          
BLAST of DN618266 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 4.868e-27
Identity = 56/80 (70.00%), Postives = 65/80 (81.25%), Query Frame = -2
Query:  375 IYSVIPQWSRLVGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQ---IGGSFQFP 605
            IYS  P+W + +GG FFSFWVLAHL PFAKGLMGRRG+TPTIVFVWSGL++IT+SLLWVAI+PP   +     GG FQFP
Sbjct: 1068 IYSDNPRWGKFIGGGFFSFWVLAHLNPFAKGLMGRRGKTPTIVFVWSGLLSITVSLLWVAISPPEANSNGGARGGGFQFP 1147          
The following BLAST results are available for this feature:
BLAST of DN618266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CSLD3_ARATH3.973e-3790.91Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CSLD2_ARATH2.575e-3687.01Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]
CSLD2_ORYSJ3.719e-3588.31Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI3.719e-3588.31Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD1_ORYSJ5.937e-3381.01Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI5.937e-3381.01Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD4_ARATH4.704e-3074.39Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLD4_ORYSJ6.793e-2973.42Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLD5_ARATH1.159e-2876.62Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLD3_ORYSJ4.868e-2770.00Cellulose synthase-like protein D3 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02F09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618266 ID=DN618266; Name=DN618266; organism=Citrus sinensis; type=EST; length=606bp
GATAATTTACAGGAAAAATTAACAAGAAGATTTTTCGATATAATATTACA
AAGAGTTCAGCCTAATGTTCAGCAACCAAAATTAAAAAAGAATGGATCTT
AACATCAATCTTGAGCATCCATGTAAAAGAGAGACACTAATATAAGTAAT
CCATGTAAGACATAGATACAATAAAAACAAAATGCCAGGAAAACTAGTTT
CCCATTCTCTTCACCCATCTAAGCTTTCCTAAACTTACTAATTGAAGTTC
AAATGGGCACAATAAACAGAGCATATCTTGGGCTGTTCAACAGCTTAATC
AACTTGTCGAACAAGAATAAATGAAGGAATGTCAATAAAAAGATTAAACT
GAAGAGAAGAAGAATGACCTATTATGGGAACTGGAATGAACCTCCTATTT
GGTTAGTACCAGCTGGAGGATTGATTGCCACCCAAAGGAGAGAGATGGTG
ATTGCGATAAGTCCTGACCATACAAAAACAATGGTAGGTGTTCTGCCTCT
TCTTCCCATAAGCCCTTTTGCGAAAGGATAGAGATGGGCCAAAACCCAGA
AACTGAAGAAAACTCCACCCACTAAGCGACTCCATTGTGGTATAACACTG
TAAATT
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