DN618257

Overview
NameDN618257
Unique NameDN618257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618257 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.905e-35
Identity = 75/171 (43.86%), Postives = 92/171 (53.80%), Query Frame = 3
Query:    3 RFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNAILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWXXXXXXXXXXXXXXXXXXXXXXXXNQFEKPRAVITEEFESDE---QDNRIGGTVQ 506
            R FKQY+LL+  NQM S LF+ + A+GRN++VA T                  R+++KKWW W YW SP+MY QNAILANEF GHSW +    S+E+LGV  L+SR F  HAYWYW                        N   KP+AVI EE  SDE   Q  R  G V+
Sbjct:  637 RLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDETELQSARSEGVVE 807          
BLAST of DN618257 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.926e-32
Identity = 75/181 (41.44%), Postives = 95/181 (52.49%), Query Frame = 3
Query:    3 RFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNAILANEFLGHSWKKFT-PT-STESLGVQVLESREFFAHAYWYWXXXXXXXXXXXXXXXXXXXXXXXXNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDN 539
            RFF+ Y+LL+  +QM SGLFR L A+GR +VVA T                  RE +KKWW W YWSSP+MYAQNAI  NEFLGHSW K   PT S ++LGVQVL+ R  F  A WYW                        +   K +AV++EE   ++  NR G  V+L   G    ++
Sbjct:  636 RFFRHYVLLVLISQMASGLFRLLAALGREMVVADTFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSNDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEELREKHVNRTGENVELLTLGTDSQNS 816          
BLAST of DN618257 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.127e-32
Identity = 70/180 (38.89%), Postives = 94/180 (52.22%), Query Frame = 3
Query:    3 RFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNAILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWXXXXXXXXXXXXXXXXXXXXXXXXNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNR 542
            RFFKQ+LLLL  NQM S LFRF+ A+GR + VA T                  R +VK WW W YW+SP+MY+ NAIL NEF G  WK      TE LG  V+ +R FF  AYWYW                        N F+KP+A I++E E++E ++     +  +  G+S ++N+
Sbjct:  648 RFFKQFLLLLLVNQMASALFRFIAAVGRTMGVASTFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGGTEPLGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDESENNESES--SPQITSTQEGDSASENK 825          
BLAST of DN618257 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.544e-31
Identity = 67/180 (37.22%), Postives = 96/180 (53.33%), Query Frame = 3
Query:    3 RFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNAILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWXXXXXXXXXXXXXXXXXXXXXXXXNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNR 542
            RF KQ+LLL+  NQM SG+FRF+GA+GR + VA T                  R++VK WW W YW SP+MY+ N+IL NEF G  W    P   E+LG  V++SR FF  AYWYW                        N F+KP+AV+ E+ E+ E +  +   +  ++ G+S ++++
Sbjct:  644 RFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENAE-NGEVSSQITSTDGGDSISESQ 822          
BLAST of DN618257 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.323e-31
Identity = 63/116 (54.31%), Postives = 73/116 (62.93%), Query Frame = 3
Query:    3 RFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNAILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYW 350
            RFFKQYLLLLA NQM S LFRF+  IGR++VV++T                  R +VKKWW W YW SP+ YAQNAI  NEFLGHSW +  P    +LGV VL+SR  F  A WYW
Sbjct:  640 RFFKQYLLLLALNQMSSALFRFIAGIGRDMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQILPGENVTLGVSVLKSRGIFTEAKWYW 755          
BLAST of DN618257 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.669e-31
Identity = 72/179 (40.22%), Postives = 88/179 (49.16%), Query Frame = 3
Query:    3 RFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNAILANEFLGHSWKKF--TPTSTESLGVQVLESREFFAHAYWYWXXXXXXXXXXXXXXXXXXXXXXXXNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGN 533
            RFFKQYLL+LA NQM + LFRF+G   RN++VA                    RE+VKKWW W YW SP+MYAQNAI  NEFLGHSW K      S E+LGVQ L SR  F  A WYW                          + K +  ++EE   ++Q N  G  + +     S N
Sbjct:  656 RFFKQYLLMLAINQMAAALFRFVGGAARNMIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPSVSEEELKEKQANINGNVLDVDTMASSTN 834          
BLAST of DN618257 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.185e-30
Identity = 62/117 (52.99%), Postives = 72/117 (61.54%), Query Frame = 3
Query:    6 FFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNAILANEFLGHSWKKF--TPTSTESLGVQVLESREFFAHAYWYW 350
            FFKQYLL+LA NQM   LFRF+G   RN++VA                    RE+VKKWW W YW SP+MYAQNAI  NE +GHSW K   +  S E+LGVQVL+SR  F  A WYW
Sbjct:  648 FFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYW 764          
BLAST of DN618257 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.185e-30
Identity = 62/117 (52.99%), Postives = 72/117 (61.54%), Query Frame = 3
Query:    6 FFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNAILANEFLGHSWKKF--TPTSTESLGVQVLESREFFAHAYWYW 350
            FFKQYLL+LA NQM   LFRF+G   RN++VA                    RE+VKKWW W YW SP+MYAQNAI  NE +GHSW K   +  S E+LGVQVL+SR  F  A WYW
Sbjct:  648 FFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYW 764          
BLAST of DN618257 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.382e-29
Identity = 64/179 (35.75%), Postives = 91/179 (50.84%), Query Frame = 3
Query:    3 RFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNAILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWXXXXXXXXXXXXXXXXXXXXXXXXNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDN 539
            R F+ YLLL+  +Q+ SGLFR L A+GR++VVA T                  RE++KK+W W YWSSP+MYAQNAI  NEFLGHSW K    + ++LG + L +R  F    WYW                        +   K +  ++EE   +++ NR G  V+L+  G +   +
Sbjct:  640 RMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFGAFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQTLGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQEKEANRTGANVELATRGSAATSD 818          
BLAST of DN618257 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.306e-29
Identity = 70/179 (39.11%), Postives = 86/179 (48.04%), Query Frame = 3
Query:    3 RFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNAILANEFLGHSWKKF--TPTSTESLGVQVLESREFFAHAYWYWXXXXXXXXXXXXXXXXXXXXXXXXNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGN 533
            RFFKQYLL+LA +QM + LFRF+G   RNL+VA                    R++V KWW W YW SP+MYAQNA+  NEFLGHSW K      S E+LGVQ L SR  F  A WYW                            K +  I+EE   ++Q N  G  + +     S N
Sbjct:  660 RFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLGGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRGIFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEEELKEKQANINGNVLDVDTMASSNN 838          
The following BLAST results are available for this feature:
BLAST of DN618257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
AB40G_ARATH2.905e-3543.86ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR7_ORYSJ3.926e-3241.44Putative pleiotropic drug resistance protein 7 OS=... [more]
PDR1_NICPL5.127e-3238.89Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR1_TOBAC2.544e-3137.22Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR4_ORYSJ3.323e-3154.31Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR2_ORYSJ5.669e-3140.22Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR3_ORYSJ8.185e-3052.99Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI8.185e-3052.99Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
TUR2_SPIPO2.382e-2935.75Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR1_ORYSJ5.306e-2939.11Probable pleiotropic drug resistance protein 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02F04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618257 ID=DN618257; Name=DN618257; organism=Citrus sinensis; type=EST; length=543bp
GAAGGTTTTTTAAGCAGTACTTGCTCCTCTTGGCTTTTAACCAGATGATT
TCTGGATTGTTTAGATTCCTTGGAGCAATAGGCAGGAACCTGGTTGTTGC
TTACACTTTTGGTTCATTTGCAGTACTCGTGCTTTTGGCTTTGGGAGGCT
TCGTCCTTTCACGAGAGGAAGTTAAAAAATGGTGGAAATGGGCTTACTGG
AGTTCTCCTGTGATGTACGCACAGAATGCAATTTTGGCAAATGAATTTCT
TGGGCACAGTTGGAAAAAGTTTACTCCAACTTCAACTGAATCGCTTGGAG
TTCAAGTTTTGGAGTCTCGTGAGTTCTTCGCCCATGCATATTGGTATTGG
CTTGGATTAGGGGCTTTGTTTGGTTTCATACTACTGTTGAACCTTGGTTT
CGCCTTGGCTCTTACTTTCCTTAACCAGTTTGAGAAGCCTCGGGCTGTAA
TAACAGAGGAATTTGAAAGTGATGAGCAAGATAACAGAATTGGAGGAACT
GTTCAGTTATCAAACTGTGGAGAGAGTGGAAATGACAATAGGG
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