DN618256

Overview
NameDN618256
Unique NameDN618256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618256 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.068e-67
Identity = 97/151 (64.24%), Postives = 123/151 (81.46%), Query Frame = -2
Query:   24 FATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTTFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFY 476
            F +++SQ  ++Q MACLWKQHWSYWRNPAYTAVR +FTTFIAL+ G++FWD+G K  + QDL NAMGSM+ A++FLG +   SVQPVV VER VFYRE AAGM+S IP+A AQ++IEIPY+FVQ+ +Y  IVY+M+ F+WT AKFFW  F+
Sbjct: 1153 FDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFGTMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSAIPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFF 1303          

HSP 2 Score: 58.9214 bits (141), Expect = 1.068e-67
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = -3
Query:  476 EVALGVDFCDIYKRSELCRRNKLLIEDLSKPAPGSKDLH 592
            E+ALGVDF D+YK+S+L RRNK LI++LS P PG+ DLH
Sbjct: 1114 EMALGVDFTDLYKKSDLYRRNKALIDELSVPRPGTSDLH 1152          
BLAST of DN618256 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 6.797e-64
Identity = 97/151 (64.24%), Postives = 115/151 (76.16%), Query Frame = -2
Query:   24 FATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTTFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFY 476
            F TQYSQS   Q +ACLWKQH SYWRNP Y A+R  FTT IAL+ G+IFWDLGGK  + QDL NAMGSM+ A++F+G     SVQPVV VER VFYRE AAGM+S +P+A  Q+ IE PY  VQS+IYS IVY+M+ F WT AKFFWY+F+
Sbjct: 1186 FPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQDLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWYLFF 1336          

HSP 2 Score: 56.9954 bits (136), Expect = 6.797e-64
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = -3
Query:  452 EVALGVDFCDIYKRSELCRRNKLLIEDLSKPAPGSKDLHLLPSTLSQ 592
            E AL VDFCDIY++SEL +RNK LI++LS P PGS +L+  P+  SQ
Sbjct: 1147 EQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELY-FPTQYSQ 1192          
BLAST of DN618256 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.871e-60
Identity = 106/151 (70.20%), Postives = 126/151 (83.44%), Query Frame = -2
Query:   24 FATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTTFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFY 476
            F TQYSQS  +Q MA LWKQHWSYWRNP YTAVRFLFT  IAL+ G++FWDLGGKT+ RQDLSNAMGSM+TA++FLG +   SVQPVV VER VFYRE AAGM+S +P+A AQ+ IEIPYV VQ+++Y  IVYAM+ F+WTA KFFWY+F+
Sbjct: 1140 FPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFF 1290          
BLAST of DN618256 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.316e-60
Identity = 91/151 (60.26%), Postives = 118/151 (78.15%), Query Frame = -2
Query:   24 FATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTTFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFY 476
            FATQ+SQS   Q +ACLWKQH SYWRNP+YTA R  FT  IAL+ G+IFWDLG K     DL NAMGSM+ A++F+G +   +VQP+V VER VFYRE AAGM+S +P+A AQ++IE+P++ VQ+L+Y  +VY+M+ FDWTAAKF WY+F+
Sbjct: 1158 FATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIFGTIFWDLGKKRSTSLDLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGMYSALPYAYAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFF 1308          

HSP 2 Score: 47.7506 bits (112), Expect = 4.316e-60
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = -3
Query:  479 EVALGVDFCDIYKRSELCRRNKLLIEDLSKPAPGSKDL 592
            E  LG++F ++Y+ S+L +RNK LI++LS P PGSKDL
Sbjct: 1119 EEILGLNFAEVYRNSDLYKRNKDLIKELSTPPPGSKDL 1156          
BLAST of DN618256 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 7.862e-59
Identity = 102/150 (68.00%), Postives = 122/150 (81.33%), Query Frame = -2
Query:   27 FATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTTFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIF 476
            F TQYSQS ++Q +ACLWKQHWSYWRNPAYTAVRF+FTTFIAL+ G++FWDLG K  K QDL NAMGSM+ A++FLG +   SVQPVV +ER VFYRE AAGM+S IP+A  Q+ IEIPY+FVQS+ Y  IVYAM+ F+W   KFFWY+F
Sbjct: 1152 FETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLF 1301          
BLAST of DN618256 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 6.655e-58
Identity = 103/155 (66.45%), Postives = 122/155 (78.71%), Query Frame = -2
Query:   12 FATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTTFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYYVLS 476
            F TQYSQS+ +Q MACLWKQ+ SYWRNP Y AVRF FTT IALL G+IFWDLGGK  K QDL NAMGSM+ A++F+G   C SVQPVV VER VFYRE AAGM+S  P+A  Q++IEIPY  VQ+ +Y  IVYAM+ F+WTAAKFFWY+F+ V +
Sbjct: 1175 FPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFT 1329          
BLAST of DN618256 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 6.655e-58
Identity = 103/155 (66.45%), Postives = 122/155 (78.71%), Query Frame = -2
Query:   12 FATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTTFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYYVLS 476
            F TQYSQS+ +Q MACLWKQ+ SYWRNP Y AVRF FTT IALL G+IFWDLGGK  K QDL NAMGSM+ A++F+G   C SVQPVV VER VFYRE AAGM+S  P+A  Q++IEIPY  VQ+ +Y  IVYAM+ F+WTAAKFFWY+F+ V +
Sbjct: 1175 FPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFT 1329          
BLAST of DN618256 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 5.830e-54
Identity = 96/171 (56.14%), Postives = 127/171 (74.27%), Query Frame = -2
Query:   24 RFKQACSRFKGPP-------FATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTTFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFY 515
            R K+       PP       F TQYS+S  +Q +ACLWKQ+WSYWRNP+YTAVR LFT  IAL+ G++FW+LG +T+K+QDL NAMGSM+ A++++G +   SVQPVV VER VFYRE AAGM+S  P+A  Q+ IE+PY+ VQ+LIY  +VY+M+ F+WT AKF WY+F+
Sbjct: 1147 RNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFF 1317          
BLAST of DN618256 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.216e-53
Identity = 97/151 (64.24%), Postives = 115/151 (76.16%), Query Frame = -2
Query:   24 FATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTTFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFY 476
            F T+YS S  +Q +ACLWK H SYWRNP Y A+R  FTT IALL G+IFWDLGGKT K QDL NAMGSM++A++F+G     SVQPVV VER VFYRE AAGM+S  P+A  Q+ IE PY  VQS+IY  IVY+M+ F WTAAKFFWY+F+
Sbjct: 1182 FPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIALLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFF 1332          
BLAST of DN618256 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.450e-52
Identity = 99/175 (56.57%), Postives = 124/175 (70.86%), Query Frame = -2
Query:   18 H*RFKQACSRFKGPP-------FATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTTFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYYV 521
            H R K        PP       F +QYSQS F+QF  CLWKQ W+YWR+P Y  VR  F  F AL+LG+IFW +G K E  +DL   +GSM+ A++F+GFE  ++VQPVV VER VFYRE AAGM+S IP+ALAQ+++EIPYVFV+++IY+ IVY MMSF WT AKFFW  F+YV
Sbjct: 1201 HQRTKALVKELSNPPPGSDDLYFPSQYSQSTFNQFKLCLWKQWWTYWRSPDYNLVRIFFALFTALMLGTIFWRVGHKMESSKDLLVIIGSMYAAVLFVGFENSVTVQPVVAVERTVFYRERAAGMYSAIPYALAQVVVEIPYVFVETVIYTLIVYPMMSFQWTPAKFFW--FFYV 1373          
The following BLAST results are available for this feature:
BLAST of DN618256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PDR1_NICPL1.068e-6764.24Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR1_ORYSJ6.797e-6464.24Probable pleiotropic drug resistance protein 1 OS=... [more]
AB40G_ARATH1.871e-6070.20ABC transporter G family member 40 OS=Arabidopsis ... [more]
TUR2_SPIPO4.316e-6060.26Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR1_TOBAC7.862e-5968.00Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR3_ORYSJ6.655e-5866.45Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI6.655e-5866.45Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR4_ORYSJ5.830e-5456.14Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR2_ORYSJ2.216e-5364.24Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR15_ORYSJ2.450e-5256.57Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02F04_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618256 ID=DN618256; Name=DN618256; organism=Citrus sinensis; type=EST; length=594bp
TTTTTAATGGGCGAAAGTACATAGTAGAATATATACCAAAAGAACTTTGC
AGCTGTCCAGTCAAATGACATCATAGCATACACTATAGAACTGTAAATTA
ATGACTGAACAAACACATAAGGAATCTCAATCATAATTTGTGCTAAAGCC
CATGGAATGCCCGAAAACATGCCGGCGGCTACTTCTCTGTAAAAGACCAT
CCTTTCAACAAATACTACTGGCTGCACTGATATACAATATTCAAAGCCGA
GGAAGATAAGTGCAGTAAACATGGAACCCATTGCATTAGACAGATCTTGC
CTCTTTTCCGTTTTACCACCCAAGTCCCAAAAAATTGAACCCAGCAACAA
TGCTATAAAAGTAGTAAAAAGGAATCTAACAGCAGTGTATGCTGGATTTC
GCCAGTATGACCAGTGTTGCTTCCATAAGCAAGCCATAAATTGGGAGAAA
GCTGACTGAGAGTACTGGGTAGCAAATGGAGGTCCTTTGAACCTGGAGCA
GGCTTGCTTAAATCTTCAATGAGTAATTTGTTTCTCCTACACAACTCTGA
GCGTTTGTAAATATCACAAAAATCAACCCCCAAAGCTACTTCTT
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