DN618251

Overview
NameDN618251
Unique NameDN618251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618251 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.050e-64
Identity = 123/168 (73.21%), Postives = 135/168 (80.36%), Query Frame = 1
Query:  121 SPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 624
            SP++  RASPYG+LL+R +EY                     GGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILT+LEV+DHS+RLVLEVAQHMGEG+VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR        VIGEPIDE+GD+KT H+LPIHREAP
Sbjct:   35 SPSSKSRASPYGYLLTRAAEYATSAAAAAPPQPPPAKPEGGKGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTSLEVLDHSIRLVLEVAQHMGEGMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRANPWTYHEVIGEPIDERGDIKTSHFLPIHREAP 202          
BLAST of DN618251 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.478e-63
Identity = 126/174 (72.41%), Postives = 139/174 (79.89%), Query Frame = 1
Query:  121 SPAATR------RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 624
            SPAA R      R SP G+L +R + Y               +   K GGGKITDEFTG GAIGQVCQVIGAVVDVRFDEGLPPILTALEV+D+++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVIGEPIDEKGD+KT H+LPIHREAP
Sbjct:   21 SPAAPRPRAPPHRPSPAGYLFNRAAAYASSAAAQAAPATPPPA-TGKTGGGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDNNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDIKTNHFLPIHREAP 193          
BLAST of DN618251 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 7.638e-63
Identity = 121/162 (74.69%), Postives = 133/162 (82.10%), Query Frame = 1
Query:  139 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 624
            R SP G+L +R + Y               +  K  GGGKITDEFTG GA+GQVCQVIGAVVDVRFDEGLPPILTALEV+DH++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRIMNVIGEPIDEKGD+ T H+LPIHREAP
Sbjct:   32 RPSPSGYLFNRAAAYATAAAAKEAAPPAPATG-KATGGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDEKGDITTNHFLPIHREAP 192          
BLAST of DN618251 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.321e-58
Identity = 118/168 (70.24%), Postives = 133/168 (79.17%), Query Frame = 1
Query:  130 ATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGG---GKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 624
            A+ RASP G LL+R  +Y               S   K G    GKITDEFTG G+IG+VCQVIGAVVDVRFDEGLPPILTALEV+D+ +RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVIGE IDE+G + T+H+LPIHREAP
Sbjct:   37 ASSRASPKGFLLNRAVQYATSAAAPASQP----STPPKSGSEPSGKITDEFTGAGSIGKVCQVIGAVVDVRFDEGLPPILTALEVLDNQIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEAIDERGPITTDHFLPIHREAP 200          
BLAST of DN618251 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 5.862e-55
Identity = 109/170 (64.12%), Postives = 131/170 (77.06%), Query Frame = 1
Query:  121 SPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 624
            SP+  R A+P  +LL RV+EY               S       GK T ++ GKGAIG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+AP
Sbjct:   31 SPSPARHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAP 196          
BLAST of DN618251 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 5.862e-55
Identity = 109/170 (64.12%), Postives = 131/170 (77.06%), Query Frame = 1
Query:  121 SPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 624
            SP+  R A+P  +LL RV+EY               S       GK T ++ GKGAIG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+AP
Sbjct:   31 SPSPARHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAP 196          
BLAST of DN618251 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.228e-54
Identity = 109/172 (63.37%), Postives = 130/172 (75.58%), Query Frame = 1
Query:  115 VFSPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 624
            + SP     A+P G LL RV+EY               S       GK T ++ GKGAIG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+AP
Sbjct:   32 LLSPGPAHGAAPCGTLLGRVAEYSTSSPANSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAP 199          
BLAST of DN618251 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.222e-52
Identity = 98/126 (77.78%), Postives = 113/126 (89.68%), Query Frame = 1
Query:  247 GGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 624
            G G ITDE TG GAIGQVCQ+IGAVVDV+F+EGLPPI+TALEV+D  +RLVLEVA  +GE  VRTIAMDGTEGLVRGQ+VLNTG+PIT+PVGR TLGRI+NVIGEPID +G++KT+ YLPIHREAP
Sbjct:   66 GKGTITDEKTGAGAIGQVCQIIGAVVDVKFEEGLPPIMTALEVIDFEIRLVLEVAPSLGENTVRTIAMDGTEGLVRGQKVLNTGAPITIPVGRATLGRIINVIGEPIDHRGEIKTDQYLPIHREAP 191          
BLAST of DN618251 vs. ExPASy Swiss-Prot
Match: ATPB_RAT (ATP synthase subunit beta, mitochondrial OS=Rattus norvegicus GN=Atp5b PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.824e-41
Identity = 83/113 (73.45%), Postives = 95/113 (84.07%), Query Frame = 1
Query:  286 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 624
            A GQ+  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP
Sbjct:   59 ATGQIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAP 171          
BLAST of DN618251 vs. ExPASy Swiss-Prot
Match: ATPB_HUMAN (ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 4.818e-41
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 1
Query:  286 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 624
            A G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP
Sbjct:   59 ATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAP 171          
The following BLAST results are available for this feature:
BLAST of DN618251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPBM_HEVBR4.050e-6473.21ATP synthase subunit beta, mitochondrial OS=Hevea ... [more]
ATPBM_MAIZE4.478e-6372.41ATP synthase subunit beta, mitochondrial OS=Zea ma... [more]
ATPBM_ORYSJ7.638e-6374.69ATP synthase subunit beta, mitochondrial OS=Oryza ... [more]
ATPBM_NICPL3.321e-5870.24ATP synthase subunit beta, mitochondrial OS=Nicoti... [more]
ATPBN_ARATH5.862e-5564.12ATP synthase subunit beta-2, mitochondrial OS=Arab... [more]
ATPBM_ARATH5.862e-5564.12ATP synthase subunit beta-1, mitochondrial OS=Arab... [more]
ATPBO_ARATH2.228e-5463.37ATP synthase subunit beta-3, mitochondrial OS=Arab... [more]
ATPBM_DAUCA1.222e-5277.78ATP synthase subunit beta, mitochondrial OS=Daucus... [more]
ATPB_RAT2.824e-4173.45ATP synthase subunit beta, mitochondrial OS=Rattus... [more]
ATPB_HUMAN4.818e-4172.57ATP synthase subunit beta, mitochondrial OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02F01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618251 ID=DN618251; Name=DN618251; organism=Citrus sinensis; type=EST; length=626bp
CTCATTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCTT
ATCATCTCTCCTTCGCTCGTCTGTCCGCCGATCTCCCTCCAAATCTTCGC
TTTCTAACTCATCTGTGTTCTCCCCTGCCGCCACGCGCCGCGCGTCTCCT
TATGGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGC
CACTGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCG
GTGGTAAAATCACCGATGAGTTTACTGGAAAGGGCGCGATCGGTCAGGTT
TGTCAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCC
TCCGATTTTGACCGCGCTTGAAGTGGTAGATCACTCCGTTCGGTTAGTGC
TTGAGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATG
GATGGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTC
TCCAATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATG
TCATTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTAC
TTGCCCATCCACAGAGAGGCTCCAGC
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