DN618247

Overview
NameDN618247
Unique NameDN618247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACPM_ARATH (Acyl carrier protein, mitochondrial OS=Arabidopsis thaliana GN=At2g44620 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.579e-17
Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = -3
Query:  274 NFQKVDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQA 471
            +F KVD SKVT   H  NDLGLDSLDTVE+VMA+EEEF  EIPD EADKI++ ++A++++ +HP +
Sbjct:   56 SFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDSCSLAIEYVYNHPMS 121          
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACPM_NEUCR (Acyl carrier protein, mitochondrial OS=Neurospora crassa GN=nuo-12 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.379e-15
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = -3
Query:  274 FQKV-DLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQA 468
            F KV D   +T  AH  NDLGLDSLDTVEVVMA+EEEF  EIPD +AD+I++++ AV++I S P A
Sbjct:   68 FDKVNDPKNITETAHFANDLGLDSLDTVEVVMAIEEEFSIEIPDKDADQIHSVDKAVEYILSQPDA 133          
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACP_LEUMU (Acyl carrier protein OS=Leucothrix mucor GN=acpP PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 4.553e-14
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = -3
Query:  283 VDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 459
            VD ++VT  A   +DLG DSLDTVE+VMALEEEFG EIPD EA+KI T+ +A+D++ SH
Sbjct:   18 VDEAEVTNAASFVDDLGADSLDTVELVMALEEEFGTEIPDEEAEKITTVQLAIDYVKSH 76          
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACP_UNCTG (Acyl carrier protein OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=acpP PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.951e-13
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = -3
Query:  283 VDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 459
            VD ++V   A   NDLG DSLDTVE+VMA EE+FG EIPD EA+KI T+  A+D++ +H
Sbjct:   18 VDPAEVVTGASFVNDLGADSLDTVELVMAFEEKFGIEIPDEEAEKIQTVGSAIDYVKTH 76          
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACP_AZOBR (Acyl carrier protein OS=Azospirillum brasilense GN=acpP PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 5.034e-13
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = -3
Query:  274 VDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQA 459
            V+ SKVT NA   +DLG DSLDTVE+VMA EEEFG EIPD+ A+KI T+  A+DFI ++  A
Sbjct:   18 VEESKVTENASFIDDLGADSLDTVELVMAFEEEFGCEIPDDAAEKILTVKDAIDFIKANAAA 79          
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACPM_SCHPO (Putative acyl carrier protein, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC4H3.09 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.034e-13
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = -3
Query:  271 NFQKV-DLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQAK 471
            +F K+ D  KVT  +   NDLGLDSLD VEVVMA+EEEF  +IPD +AD+I ++  A+ +I  +P+AK
Sbjct:   45 SFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDADEITSVGDAISYITKNPEAK 112          
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACPM_PONPY (Acyl carrier protein, mitochondrial OS=Pongo pygmaeus GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.575e-13
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = -3
Query:  289 FQKVDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 468
            + K+D  K++VN+H   DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   90 YDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACPM_PANTR (Acyl carrier protein, mitochondrial OS=Pan troglodytes GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.575e-13
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = -3
Query:  289 FQKVDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 468
            + K+D  K++VN+H   DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   90 YDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACPM_MOUSE (Acyl carrier protein, mitochondrial OS=Mus musculus GN=Ndufab1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.575e-13
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = -3
Query:  289 FQKVDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 468
            + K+D  K++VN+H   DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   90 YDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACPM_HUMAN (Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 6.575e-13
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = -3
Query:  289 FQKVDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 468
            + K+D  K++VN+H   DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   90 YDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
The following BLAST results are available for this feature:
BLAST of DN618247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
ACPM_ARATH2.579e-1760.61Acyl carrier protein, mitochondrial OS=Arabidopsis... [more]
ACPM_NEUCR5.379e-1560.61Acyl carrier protein, mitochondrial OS=Neurospora ... [more]
ACP_LEUMU4.553e-1462.71Acyl carrier protein OS=Leucothrix mucor GN=acpP P... [more]
ACP_UNCTG2.951e-1357.63Acyl carrier protein OS=Uncultured termite group 1... [more]
ACP_AZOBR5.034e-1361.29Acyl carrier protein OS=Azospirillum brasilense GN... [more]
ACPM_SCHPO5.034e-1352.94Putative acyl carrier protein, mitochondrial OS=Sc... [more]
ACPM_PONPY6.575e-1355.00Acyl carrier protein, mitochondrial OS=Pongo pygma... [more]
ACPM_PANTR6.575e-1355.00Acyl carrier protein, mitochondrial OS=Pan troglod... [more]
ACPM_MOUSE6.575e-1355.00Acyl carrier protein, mitochondrial OS=Mus musculu... [more]
ACPM_HUMAN6.575e-1355.00Acyl carrier protein, mitochondrial OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02E23_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618247 ID=DN618247; Name=DN618247; organism=Citrus sinensis; type=EST; length=473bp
AGAACATATATGATGAGTAGTGAAGAAATACCAGACCATTCCAATCTTCC
AATTTAATGGAAAGCATTTTCGACGCGGCAAGTCTCCCAAAAACAATACT
CTTCAAGCAGAGTTCAAATGGGGTCGGAAAACCAGAAAGGCTTTTAAAGT
TTACTCGTTTTTTAAGGAACAAAAATTTTAGGTACCGGGATAAGAGAATT
CTAATGCTGCTGCTAATTCTGAACATCAAAAGAGTGAAAATAGCATCGTA
GGGCTTCATAGTTTCCCCTACTTAGCCTGAGGATGAGAAGCAATGAAATC
GACAGCCATATTGATGGTATTGATCTTGTCTGCCTCATTATCTGGGATCT
CGAATCCGAATTCTTCTTCAAGTGCCATCACGACCTCCACAGTGTCCAAA
CTATCCAACCCAAGATCATTCTNGGAATGGGCATTAACCGTAACCTTGGA
AAGATCAACTTTCTGGAAGTTTT
back to top