DN618246

Overview
NameDN618246
Unique NameDN618246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACPM_ARATH (Acyl carrier protein, mitochondrial OS=Arabidopsis thaliana GN=At2g44620 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.431e-28
Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 3
Query:   24 AARGALLKYLRVNVATVQRNPSPFSLSFNSIRRCFAEEVRGSFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQA 395
            A R A+L++LRV V T+  N S   + F    R F+       L +  V DRV+ VVK+F KVDPSKVT   HFQNDLGLDSLDTVE+VMA+EEEF  EIPD EADKI++ ++A++++ +HP +
Sbjct:    2 ALRNAILRHLRVPVQTLGLNQS--KIGFLGTIRSFSSH--DDHLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDSCSLAIEYVYNHPMS 121          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACPM_NEUCR (Acyl carrier protein, mitochondrial OS=Neurospora crassa GN=nuo-12 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 8.399e-21
Identity = 61/127 (48.03%), Postives = 78/127 (61.42%), Query Frame = 3
Query:   27 ARGALLKYLRVNVAT---VQRNPSPFSLSFNSIRRCFAEEVRGSFLDKSEVTDRVISVVKNFQKV-DPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQA 395
            AR A+   +R  VA    VQ  P     +F ++R   A    G  L K EV  R+  V+  F KV DP  +T  AHF NDLGLDSLDTVEVVMA+EEEF  EIPD +AD+I++++ AV++I S P A
Sbjct:   13 ARPAVASAVRAGVARPAFVQAVPKV--AAFQAVRFYSA----GGHLKKDEVFSRIAQVLSGFDKVNDPKNITETAHFANDLGLDSLDTVEVVMAIEEEFSIEIPDKDADQIHSVDKAVEYILSQPDA 133          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACPM_PONPY (Acyl carrier protein, mitochondrial OS=Pongo pygmaeus GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.135e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  168 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 380
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACPM_PANTR (Acyl carrier protein, mitochondrial OS=Pan troglodytes GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.135e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  168 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 380
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACPM_MOUSE (Acyl carrier protein, mitochondrial OS=Mus musculus GN=Ndufab1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.135e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  168 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 380
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACPM_HUMAN (Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.135e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  168 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 380
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACPM_GORGO (Acyl carrier protein, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.135e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  168 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 380
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACPM_BOVIN (Acyl carrier protein, mitochondrial OS=Bos taurus GN=NDUFAB1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.135e-17
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  168 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIA 380
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+      VD+IA
Sbjct:   79 IKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIA 149          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACPM_SCHPO (Putative acyl carrier protein, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC4H3.09 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.313e-17
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 3
Query:  159 KSEVTDRVISVVKNFQKV-DPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQAK 398
            + +   R++ VV +F K+ DP KVT  + F NDLGLDSLD VEVVMA+EEEF  +IPD +AD+I ++  A+ +I  +P+AK
Sbjct:   32 RPDAEKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDADEITSVGDAISYITKNPEAK 112          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_LEUMU (Acyl carrier protein OS=Leucothrix mucor GN=acpP PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.639e-16
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 386
            S++  RV +VV     VD ++VT  A F +DLG DSLDTVE+VMALEEEFG EIPD EA+KI T+ +A+D++ SH
Sbjct:    2 SDIEQRVKNVVVEQLGVDEAEVTNAASFVDDLGADSLDTVELVMALEEEFGTEIPDEEAEKITTVQLAIDYVKSH 76          
The following BLAST results are available for this feature:
BLAST of DN618246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
ACPM_ARATH5.431e-2852.42Acyl carrier protein, mitochondrial OS=Arabidopsis... [more]
ACPM_NEUCR8.399e-2148.03Acyl carrier protein, mitochondrial OS=Neurospora ... [more]
ACPM_PONPY1.135e-1756.34Acyl carrier protein, mitochondrial OS=Pongo pygma... [more]
ACPM_PANTR1.135e-1756.34Acyl carrier protein, mitochondrial OS=Pan troglod... [more]
ACPM_MOUSE1.135e-1756.34Acyl carrier protein, mitochondrial OS=Mus musculu... [more]
ACPM_HUMAN1.135e-1756.34Acyl carrier protein, mitochondrial OS=Homo sapien... [more]
ACPM_GORGO1.135e-1756.34Acyl carrier protein, mitochondrial OS=Gorilla gor... [more]
ACPM_BOVIN1.135e-1756.34Acyl carrier protein, mitochondrial OS=Bos taurus ... [more]
ACPM_SCHPO4.313e-1750.62Putative acyl carrier protein, mitochondrial OS=Sc... [more]
ACP_LEUMU1.639e-1657.33Acyl carrier protein OS=Leucothrix mucor GN=acpP P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02E23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618246 ID=DN618246; Name=DN618246; organism=Citrus sinensis; type=EST; length=591bp
GGCAGCAGATACTGAAAATGGCGGCGGCGAGAGGTGCCTTGCTAAAGTAC
CTGAGAGTGAACGTGGCCACCGTGCAACGAAACCCTAGCCCCTTTTCTCT
CTCATTCAACTCCATACGCCGCTGTTTCGCGGAAGAGGTCAGGGGCTCTT
TCCTCGACAAATCTGAAGTCACCGATCGCGTCATTTCCGTCGTTAAAAAC
TTCCAGAAAGTTGATCCTTCCAAGGTTACGGTTAATGCCCATTTCCAGAA
TGATCTTGGGTTGGATAGTTTGGACACTGTGGAGGTCGTGATGGCACTTG
AAGAAGAATTCGGATTCGAGATCCCAGATAATGAGGCAGACAAGATCAAT
ACCATCAATATGGCTGTCGATTTCATTGCTTCTCATCCTCAGGCTAAGTA
GGGGAAACTATGAAGCCCTACGATGCTATTTTCACTCTTTTGATGTTCAG
AATTAGCAGCAGCATTAGAATTCTCTTATCCCGGTACCTAANATTTTTGT
TCCTTAAAAAACGAGTAAACTTTAAAAGCCTTTCTGGTTTTCCGACCCCA
TTTGAACTCTGCTTGAAGAGTATTGTTTTTGGGAGACTTGC
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