DN618244

Overview
NameDN618244
Unique NameDN618244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618244 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.058e-41
Identity = 83/91 (91.21%), Postives = 85/91 (93.41%), Query Frame = 1
Query:    1 EQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 273
            EQPAFDKKQFVTYMKRFIKLLTPKL EE+QE FKKNIEGATKFLLSKLSDLQFFVGESMHDDG LVFAYY+ GATDPTFLY A ALKEVKC
Sbjct:   78 EQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168          
BLAST of DN618244 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.170e-40
Identity = 78/91 (85.71%), Postives = 85/91 (93.41%), Query Frame = 1
Query:    1 EQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 273
            EQPAFDKKQFVT+MKR+IK LTPKL  E+QE+FKK+IEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYK+GATDPTFLY A  LKE+KC
Sbjct:   78 EQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168          
BLAST of DN618244 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 7.096e-38
Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 1
Query:    1 EQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 273
            EQP  DKKQF+ Y+K+FIKLLTPKL  E+QE FKKNIEGATKFLL KL D +FFVGESMHDD C+VFAYY+EGATDPTFLY+A ALKEVKC
Sbjct:   78 EQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168          
BLAST of DN618244 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.581e-37
Identity = 74/91 (81.32%), Postives = 81/91 (89.01%), Query Frame = 1
Query:    1 EQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 273
            EQPAFDKKQFVT+MKRFIK LTPKL  E+QE+FKK+IEGATK+LLSK+ D QFFVGESM DD CLVFAYYK+GA DPTFLY A ALKEVKC
Sbjct:   78 EQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKHIEGATKYLLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYALKEVKC 168          
BLAST of DN618244 vs. ExPASy Swiss-Prot
Match: TCTP_MEDSA (Translationally-controlled tumor protein homolog OS=Medicago sativa GN=TCTP PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 3.522e-37
Identity = 72/91 (79.12%), Postives = 82/91 (90.11%), Query Frame = 1
Query:    1 EQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 273
            EQPAFDKKQF+ ++KR+IKLLTPKL  E+QE+FKK+IEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GA DPTFLY A ALKE+KC
Sbjct:   77 EQPAFDKKQFLGFVKRYIKLLTPKLDAEKQELFKKHIEGATKYLLCKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFAYALKEIKC 167          
BLAST of DN618244 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 6.007e-37
Identity = 73/91 (80.22%), Postives = 78/91 (85.71%), Query Frame = 1
Query:    1 EQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 273
            EQPAFDKKQFVT+MKR+IK LTPKL  E QE FKKNIE ATKFLL K+ DLQFFVGESMHDDG LVFAYYKEG+ DP FLYIA  LKE+KC
Sbjct:   78 EQPAFDKKQFVTFMKRYIKNLTPKLEGETQEAFKKNIEAATKFLLQKIKDLQFFVGESMHDDGALVFAYYKEGSADPPFLYIAPGLKEIKC 168          
BLAST of DN618244 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.894e-36
Identity = 71/91 (78.02%), Postives = 77/91 (84.62%), Query Frame = 1
Query:    1 EQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 273
            EQPAFDKKQFVTY+KR+IK LTPKL  E QE FKKNIE ATKFLLSKL D QFFVGE MHDD  LVFAYYK+G+ DPTFLY+A  LKE+KC
Sbjct:   78 EQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168          
BLAST of DN618244 vs. ExPASy Swiss-Prot
Match: TCTP_PEA (Translationally-controlled tumor protein homolog OS=Pisum sativum GN=TCTP PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 5.085e-36
Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = 1
Query:    1 EQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 273
            EQP FDKKQF+ ++K++IKLLTPKL  E+QE FKKNIEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GA DPTFLY + ALKE+KC
Sbjct:   77 EQPPFDKKQFLGFVKKYIKLLTPKLEAEKQEHFKKNIEGATKYLLGKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFSFALKEIKC 167          
BLAST of DN618244 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.085e-36
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 1
Query:    1 EQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 273
            EQP FDKKQFVT+MKR+IK L+ KL  E+QE FKKNIEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GATDPTFLY +  LKEVKC
Sbjct:   78 EQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168          
BLAST of DN618244 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.674e-36
Identity = 71/91 (78.02%), Postives = 79/91 (86.81%), Query Frame = 1
Query:    1 EQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 273
            EQP FDKKQF+ ++KR+IK L  KLSEERQ  FKKN+EGA K L+SKLSDLQFFVGESMHDDG +VFAYYK+GATDPTFLY AD LKEVKC
Sbjct:   77 EQPPFDKKQFLGFIKRYIKNLATKLSEERQAEFKKNVEGAAKMLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEVKC 167          
The following BLAST results are available for this feature:
BLAST of DN618244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TCTP_HEVBR1.058e-4191.21Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV1.170e-4085.71Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA7.096e-3879.12Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN1.581e-3781.32Translationally-controlled tumor protein homolog O... [more]
TCTP_MEDSA3.522e-3779.12Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC6.007e-3780.22Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU3.894e-3678.02Translationally-controlled tumor protein homolog O... [more]
TCTP_PEA5.085e-3676.92Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ5.085e-3679.12Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ8.674e-3678.02Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02E21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618244 ID=DN618244; Name=DN618244; organism=Citrus sinensis; type=EST; length=459bp
GAGCAACCTGCTTTTGACAAGAAGCAGTTTGTAACATACATGAAGAGATT
CATCAAGTTGCTGACGCCCAAACTGAGTGAGGAGAGGCAGGAGATATTTA
AGAAGAATATTGAGGGAGCGACCAAGTTCTTGCTCTCGAAGCTCAGTGAC
CTTCAATTCTTTGTTGGGGAGAGCATGCATGATGATGGCTGTCTTGTCTT
TGCTTACTACAAGGAAGGTGCGACCGACCCAACATTTTTGTATATTGCTG
ATGCATTGAAGGAGGTGAAGTGCTAAGCCGGGCTTCGAAGAGGAAGTGCC
TGCTGTAGTTCTAGTTTTAATTATTGCCCGCGGTTATTTTTATGTATCTT
TTGTACTGGTTTACTCGGGACTTGTGCTTGCTGTTTTTTAGTTTTTATTT
TGACATAGACAATATGTTTTTCTGCTCCTAATTATTGTGTTTTATGGTTT
GAGATTGAA
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