DN618243

Overview
NameDN618243
Unique NameDN618243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618243 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 9.294e-42
Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = -1
Query:  209 REQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 484
            +EQPAFDKKQFVTYMKRFIKLLTPKL EE+QE FKKNIEGATKFLLSKLSDLQFFVGESMHDDG LVFAYY+ GATDPTFLY A ALKEVKC
Sbjct:   77 QEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168          
BLAST of DN618243 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.028e-40
Identity = 78/92 (84.78%), Postives = 86/92 (93.48%), Query Frame = -1
Query:  209 REQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 484
            +EQPAFDKKQFVT+MKR+IK LTPKL  E+QE+FKK+IEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYK+GATDPTFLY A  LKE+KC
Sbjct:   77 QEQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168          
BLAST of DN618243 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.234e-38
Identity = 72/92 (78.26%), Postives = 81/92 (88.04%), Query Frame = -1
Query:  209 REQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 484
            +EQP  DKKQF+ Y+K+FIKLLTPKL  E+QE FKKNIEGATKFLL KL D +FFVGESMHDD C+VFAYY+EGATDPTFLY+A ALKEVKC
Sbjct:   77 QEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168          
BLAST of DN618243 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.389e-37
Identity = 74/92 (80.43%), Postives = 82/92 (89.13%), Query Frame = -1
Query:  209 REQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 484
            +EQPAFDKKQFVT+MKRFIK LTPKL  E+QE+FKK+IEGATK+LLSK+ D QFFVGESM DD CLVFAYYK+GA DPTFLY A ALKEVKC
Sbjct:   77 QEQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKHIEGATKYLLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYALKEVKC 168          
BLAST of DN618243 vs. ExPASy Swiss-Prot
Match: TCTP_MEDSA (Translationally-controlled tumor protein homolog OS=Medicago sativa GN=TCTP PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 3.094e-37
Identity = 72/92 (78.26%), Postives = 83/92 (90.22%), Query Frame = -1
Query:  209 REQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 484
            +EQPAFDKKQF+ ++KR+IKLLTPKL  E+QE+FKK+IEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GA DPTFLY A ALKE+KC
Sbjct:   76 QEQPAFDKKQFLGFVKRYIKLLTPKLDAEKQELFKKHIEGATKYLLCKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFAYALKEIKC 167          
BLAST of DN618243 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.278e-37
Identity = 73/92 (79.35%), Postives = 79/92 (85.87%), Query Frame = -1
Query:  209 REQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 484
            +EQPAFDKKQFVT+MKR+IK LTPKL  E QE FKKNIE ATKFLL K+ DLQFFVGESMHDDG LVFAYYKEG+ DP FLYIA  LKE+KC
Sbjct:   77 QEQPAFDKKQFVTFMKRYIKNLTPKLEGETQEAFKKNIEAATKFLLQKIKDLQFFVGESMHDDGALVFAYYKEGSADPPFLYIAPGLKEIKC 168          
BLAST of DN618243 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 3.421e-36
Identity = 71/92 (77.17%), Postives = 78/92 (84.78%), Query Frame = -1
Query:  209 REQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 484
            +EQPAFDKKQFVTY+KR+IK LTPKL  E QE FKKNIE ATKFLLSKL D QFFVGE MHDD  LVFAYYK+G+ DPTFLY+A  LKE+KC
Sbjct:   77 QEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168          
BLAST of DN618243 vs. ExPASy Swiss-Prot
Match: TCTP_PEA (Translationally-controlled tumor protein homolog OS=Pisum sativum GN=TCTP PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 4.468e-36
Identity = 70/92 (76.09%), Postives = 81/92 (88.04%), Query Frame = -1
Query:  209 REQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 484
            +EQP FDKKQF+ ++K++IKLLTPKL  E+QE FKKNIEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GA DPTFLY + ALKE+KC
Sbjct:   76 QEQPPFDKKQFLGFVKKYIKLLTPKLEAEKQEHFKKNIEGATKYLLGKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFSFALKEIKC 167          
BLAST of DN618243 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 4.468e-36
Identity = 72/92 (78.26%), Postives = 80/92 (86.96%), Query Frame = -1
Query:  209 REQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 484
            +EQP FDKKQFVT+MKR+IK L+ KL  E+QE FKKNIEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GATDPTFLY +  LKEVKC
Sbjct:   77 QEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168          
BLAST of DN618243 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.621e-36
Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = -1
Query:  209 REQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 484
            +EQP FDKKQF+ ++KR+IK L  KLSEERQ  FKKN+EGA K L+SKLSDLQFFVGESMHDDG +VFAYYK+GATDPTFLY AD LKEVKC
Sbjct:   76 QEQPPFDKKQFLGFIKRYIKNLATKLSEERQAEFKKNVEGAAKMLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEVKC 167          
The following BLAST results are available for this feature:
BLAST of DN618243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
TCTP_HEVBR9.294e-4290.22Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV1.028e-4084.78Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA6.234e-3878.26Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN1.389e-3780.43Translationally-controlled tumor protein homolog O... [more]
TCTP_MEDSA3.094e-3778.26Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC5.278e-3779.35Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU3.421e-3677.17Translationally-controlled tumor protein homolog O... [more]
TCTP_PEA4.468e-3676.09Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ4.468e-3678.26Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ7.621e-3677.17Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02E21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618243 ID=DN618243; Name=DN618243; organism=Citrus sinensis; type=EST; length=484bp
TTTTTTTTTTTTTTTTTGTGTATTCAGTCTCAAACCATAAAACCCAATAA
TTAGGAGCAGAAAAACATATTGTTTATGTCAAAATAAAAACTAAAAAAAA
GCAAGCACAAGTCCCGAGTAAACCAGTACGAAAGATACATAAAAATAACC
GCGGGCAATAATTAAAACTAGAACTACAGCAGGCACTTCCTCTTCGAAGC
CCGGCTTAGCACTTCACCTCCTTCAATGCATCAGCAATATACAAAAATGT
TGGGTCGGTCGCACCTTCCTTGTAGTAAGCAAAGACAAGACAGCCATCAT
CATGCATGCTCTCCCCAACAAAGAATTGAAGGTCACTGAGCTTCGAGAGC
AAGAACTTGGTCGCTCCCTCAATATTCTTCTTAAATATCTCCTGCCTCTC
CTCACTCAGCTTGGGCGTCAGCAACTTGATGAATCTCTTCATGTATGTTA
CAAACTGCTTCTTGTCAAAAGCAGGTTGCTCCCT
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