DN618238

Overview
NameDN618238
Unique NameDN618238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN618238 vs. ExPASy Swiss-Prot
Match: AGD6_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.050e-15
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = -3 
Query:  362 PKGTGSGNNDS-WAGWDD--AKDDGYDNFYQSASDKKALGHNGKSDATWTGGGFL 517
            PKG+ + N+D  W GWDD  AKDDG+D  YQSA DKK+ GHNGKSD  WTGGGFL
Sbjct:  405 PKGSSASNDDDGWTGWDDHDAKDDGFDGHYQSAGDKKSAGHNGKSDTAWTGGGFL 459
[Close]
BLAST of DN618238 vs. ExPASy Swiss-Prot
Match: AGD7_ARATH (ADP-ribosylation factor GTPase-activating protein AGD7 OS=Arabidopsis thaliana GN=AGD7 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.161e-12
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = -3 
Query:  362 PKGTGSGNNDS--WAGWDD--AKDDGYDNFYQSASDKKALGHNGKSDATWTGGGFL 517
            PK + S ++D   WAGWDD  AKDD  D +YQ ASDKK++GHNGKSD  WTGGGFL
Sbjct:  403 PKVSTSNDDDDGGWAGWDDNDAKDD--DFYYQPASDKKSVGHNGKSDTAWTGGGFL 456
The following BLAST results are available for this feature:
BLAST of DN618238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AGD6_ARATH1.050e-1567.27Probable ADP-ribosylation factor GTPase-activating... [more]
AGD7_ARATH3.161e-1264.29ADP-ribosylation factor GTPase-activating protein ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02E18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002E18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618238 ID=DN618238; Name=DN618238; organism=Citrus sinensis; type=EST; length=588bp
TTTTTTTTTTTTTTTTTCCGAAACAACTTTGAATTTTCAAAGTCACAAAT
AATGTTTCCTCACACGAAACAGCGGTCCTTCTTTGGATGGGGCAATCTAC
CCCACTTAATAGTTGTGTACATATATAAACTACTTCAAGACACAAAGACC
TCACGAAGTGGTCATGTAAAGTTTTGAAACAAGAAAAGAGAGAAAGGACT
AAACATAGACTAACCTTCACAAAAGCAACCCGCATACATTTGCGGGTCCA
ATTTTATCCAAACAACTTTCTTATCATTTGTACTATGGTAGATTTTGTCA
TAACCACCATCTTCAGCATCCCAGCCAGCCACCAATTCATGAAACTAATC
ACCACTTACTAGAGAAAGCCTCCTCCTGTCCATGTGGCATCTGACTTCCC
ATTGTGACCCAAGGCTTTCTTATCAGATGCGCTTTGGTAGAAATTATCGT
ATCCATCGTCTTTGGCATCATCCCAGCCAGCCCAGGAGTCATTGTTACCG
GACCCTGTTCCTTTGGGAGTATCTTCCTTCTTGTCTTTTTGGTCCCAATC
ATCCCAAGAACTTGAGCCATAAAAATTATGATGCCCAG
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