DN618237

Overview
NameDN618237
Unique NameDN618237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618237 vs. ExPASy Swiss-Prot
Match: AGD7_ARATH (ADP-ribosylation factor GTPase-activating protein AGD7 OS=Arabidopsis thaliana GN=AGD7 PE=1 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 4.129e-77
Identity = 137/193 (70.98%), Postives = 155/193 (80.31%), Query Frame = 3
Query:   45 MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVXXXXXXXXXXXXXXWDSWDNDDFRSSNDMRRNQSVSDFRGGSGGMG 623
            MAA RRLR LQSQP NK+CVDC+QKNPQWAS+SYG+FMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKM+AGGNERLN FL+QYGI KETDI++KYN+NAAS+YRDRIQA+AEGR WRDPP+VKE++  G  + +PPL+Q                  WD+WDNDD   S DMRRNQS  DFR  SGG G
Sbjct:    1 MAAARRLRTLQSQPENKVCVDCSQKNPQWASISYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMDAGGNERLNNFLAQYGISKETDIISKYNSNAASVYRDRIQALAEGRQWRDPPIVKESVGGGLMNKKPPLSQGGG--------RDSGNGGWDNWDNDDSFRSTDMRRNQSAGDFR-SSGGRG 184          
BLAST of DN618237 vs. ExPASy Swiss-Prot
Match: AGD6_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.623e-73
Identity = 137/193 (70.98%), Postives = 150/193 (77.72%), Query Frame = 3
Query:   45 MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVXXXXXXXXXXXXXXWDSWDNDDFRSSNDMRRNQSVSDFRGGSGGMG 623
            MAATR+LR LQSQP NK+CVDCAQKNPQWASVSYG+FMCLECSGKHRGLGVHISFVRSVTMDSWS IQIKKMEAGGNERLN F +QYGI KETDI++KYN+NAAS+YRDRIQA+AEGRPW DPPVVKE      ++ +PPLAQ                  WDSWDNDD   S DMRRNQS +DFR      G
Sbjct:    1 MAATRQLRTLQSQPENKVCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSAIQIKKMEAGGNERLNKFFAQYGIAKETDIISKYNSNAASVYRDRIQALAEGRPWNDPPVVKE------ANKKPPLAQGG-----YGNNNNNNNGGWDSWDNDDSYKS-DMRRNQSANDFRASGNREG 181          
BLAST of DN618237 vs. ExPASy Swiss-Prot
Match: ARFG1_MOUSE (ADP-ribosylation factor GTPase-activating protein 1 OS=Mus musculus GN=Arfgap1 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.816e-32
Identity = 70/186 (37.63%), Postives = 107/186 (57.53%), Query Frame = 3
Query:   63 LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFL-SQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWR---------DPPVVKETLNAGKSSSRPPLAQSASVXXXXXXXXXXXXXXWDSWDNDDFRSSNDMRRNQSV 590
            L+++++Q  N +C +C   NPQW SV+YG+++CLECSG+HRGLGVH+SFVRSVTMD W +I+++KM+AGGN +   FL +Q        +  KY++ AA+++RD++  +AEG+ W           PP  K        +S  P + +AS               ++ W NDD  S    + N+ V
Sbjct:   10 LKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLETQDDYEPSWSLQDKYSSRAAALFRDKVATLAEGKEWSLESSPAQNWTPPQPKTLQFTAHRASGQPQSAAAS-----------GDKAFEDWLNDDLGSYQGAQENRYV 184          
BLAST of DN618237 vs. ExPASy Swiss-Prot
Match: ARFG1_HUMAN (ADP-ribosylation factor GTPase-activating protein 1 OS=Homo sapiens GN=ARFGAP1 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.816e-32
Identity = 69/177 (38.98%), Postives = 103/177 (58.19%), Query Frame = 3
Query:   63 LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFL-SQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVXXXXXXXXXXXXXXWDSWDNDDFRSSNDMRRNQSV 590
            L++++ Q  N +C +C   NPQW SV+YG+++CLECSG+HRGLGVH+SFVRSVTMD W +I+++KM+AGGN +   FL SQ        +  KYN+ AA+++RD++ A+AEGR W       +     +  + P +    S               ++ W NDD  S    + N+ V
Sbjct:   10 LKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTPPQPRTLPSMVHRVS--GQPQSVTASSDKAFEDWLNDDLGSYQGAQGNRYV 184          
BLAST of DN618237 vs. ExPASy Swiss-Prot
Match: ARFG1_RAT (ADP-ribosylation factor GTPase-activating protein 1 OS=Rattus norvegicus GN=Arfgap1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.537e-31
Identity = 69/182 (37.91%), Postives = 107/182 (58.79%), Query Frame = 3
Query:   63 LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFL-SQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW--RDPPVVKETLNAGKS---SSRPPLAQSASVXXXXXXXXXXXXXXWDSWDNDDFRSSNDMRRNQSV 590
            L+++++Q  N +C +C   NPQW SV+YG+++CLECSG+HRGLGVH+SFVRSVTMD W +I+++KM+AGGN +   FL +Q        +  KY++ AA+++RD++  +AEG+ W     P    T    K+   ++  P  Q  +V              ++ W NDD  S    + N+ V
Sbjct:   10 LKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLEAQDDYEPSWSLQDKYSSRAAALFRDKVATLAEGKEWSLESSPAQNWTPPQPKTLQFTAHRPAGQPQNV-------TTSGDKAFEDWLNDDLGSYQGAQENRYV 184          
BLAST of DN618237 vs. ExPASy Swiss-Prot
Match: ARFG3_BOVIN (ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.591e-28
Identity = 56/107 (52.34%), Postives = 77/107 (71.96%), Query Frame = 3
Query:   72 LQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDS-WSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIA 389
            L+S P NK+C DC  KNP WAS++YGVF+C++CSG HR LGVH+SF+RS  +DS WS  Q++ M+ GGN   ++F  Q+G     D   KYN+ AA +YR+RI+A+A
Sbjct:   16 LRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNANASSFFHQHGC-DTNDTNAKYNSRAAQLYRERIKALA 121          
BLAST of DN618237 vs. ExPASy Swiss-Prot
Match: ARFG3_MOUSE (ADP-ribosylation factor GTPase-activating protein 3 OS=Mus musculus GN=Arfgap3 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.714e-28
Identity = 55/107 (51.40%), Postives = 77/107 (71.96%), Query Frame = 3
Query:   72 LQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDS-WSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIA 389
            L+S P NK+C DC  KNP WAS+SYGVF+C++CSG HR LGVH+SF+RS  +DS WS  Q++ M+ GGN   ++F  Q+G   + D   KYN+ AA +YR++I+ +A
Sbjct:   16 LRSVPTNKVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNSNASSFFHQHGCATK-DTNAKYNSRAAQLYREKIKTLA 121          
BLAST of DN618237 vs. ExPASy Swiss-Prot
Match: ARFG3_RAT (ADP-ribosylation factor GTPase-activating protein 3 OS=Rattus norvegicus GN=Arfgap3 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.544e-28
Identity = 55/107 (51.40%), Postives = 77/107 (71.96%), Query Frame = 3
Query:   72 LQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDS-WSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIA 389
            L+S P NK+C DC  KNP WAS+SYGVF+C++CSG HR LGVH+SF+RS  +DS WS  Q++ M+ GGN   ++F  Q+G   + D   KYN+ AA +YR++I+ +A
Sbjct:   16 LRSVPTNKVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNANASSFFHQHGCATK-DTNAKYNSRAAQLYREKIKTLA 121          
BLAST of DN618237 vs. ExPASy Swiss-Prot
Match: ARFG3_MACFA (ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.629e-28
Identity = 54/107 (50.47%), Postives = 78/107 (72.90%), Query Frame = 3
Query:   72 LQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDS-WSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIA 389
            L+S P NK+C DC  KNP WAS++YGVF+C++CSG HR LGVH+SF+RS  +DS WS  Q++ M+ GGN   ++F  Q+G    +D   KYN+ AA +YR++I+++A
Sbjct:   16 LRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNANASSFFHQHGC-STSDTNAKYNSRAAQLYREKIKSLA 121          
BLAST of DN618237 vs. ExPASy Swiss-Prot
Match: ARFG3_PONAB (ADP-ribosylation factor GTPase-activating protein 3 OS=Pongo abelii GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.045e-28
Identity = 54/107 (50.47%), Postives = 77/107 (71.96%), Query Frame = 3
Query:   72 LQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDS-WSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIA 389
            L+S P NK+C DC  KNP WAS++YGVF+C++CSG HR LGVH+SF+RS  +DS WS  Q++ M+ GGN   ++F  Q+G     D   KYN+ AA +YR++I+++A
Sbjct:   16 LRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNANASSFFHQHGC-STNDTNAKYNSRAAQLYREKIKSLA 121          
The following BLAST results are available for this feature:
BLAST of DN618237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
AGD7_ARATH4.129e-7770.98ADP-ribosylation factor GTPase-activating protein ... [more]
AGD6_ARATH1.623e-7370.98Probable ADP-ribosylation factor GTPase-activating... [more]
ARFG1_MOUSE1.816e-3237.63ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG1_HUMAN1.816e-3238.98ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG1_RAT1.537e-3137.91ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_BOVIN1.591e-2852.34ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_MOUSE2.714e-2851.40ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_RAT3.544e-2851.40ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_MACFA4.629e-2850.47ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_PONAB6.045e-2850.47ADP-ribosylation factor GTPase-activating protein ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02E18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002E18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618237 ID=DN618237; Name=DN618237; organism=Citrus sinensis; type=EST; length=625bp
TTTGAGTGAATCCGATACAGATCGATCGGATCGGACCGTAAAAAATGGCG
GCAACGAGGCGGCTACGAGATCTCCAATCACAGCCAGGTAACAAGATCTG
CGTCGATTGCGCCCAAAAGAATCCTCAATGGGCCTCTGTTTCCTACGGCG
TCTTCATGTGCTTAGAGTGCTCCGGCAAGCACCGCGGCCTCGGTGTCCAC
ATCTCCTTTGTCCGATCCGTTACCATGGACTCCTGGTCCGAGATCCAGAT
CAAGAAAATGGAAGCTGGCGGCAACGAACGCCTCAACACGTTCCTCTCCC
AATACGGGATCCCTAAAGAAACGGATATCGTGACCAAATACAACACAAAT
GCCGCCAGCATTTATCGCGACAGAATCCAAGCTATAGCCGAGGGCCGCCC
CTGGCGGGACCCACCCGTGGTCAAAGAAACTTTGAACGCTGGGAAAAGTA
GTAGTAGGCCTCCGCTGGCACAGAGTGCTTCTGTCGGTGGCGTTGGCAGG
AATGGTAATTATGGCAATCATGGAGGGTGGGATAGTTGGGACAACGACGA
TTTTAGATCGTCGAATGATATGAGAAGGAACCAATCGGTTTCCGATTTTA
GAGGCGGGAGTGGTGGCATGGGAGG
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